Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_F05
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    28   1.4  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     27   4.3  
SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   7.5  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   7.5  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   10.0 

>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 467 SGDPAXGYVTGFSTKPXFTSDIRPVPXSLSVDSQALSSREAIGDVPGM 610
           +G PA GY  G + +    +  RP+    SV S   +  EA+  VPGM
Sbjct: 522 AGGPAPGY-PGMNARGPVPAQGRPMMMPGSVPSAGPAEAEAVPAVPGM 568


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 601 TRYDSCTGPSRXNRRWLARVKPNASRVLSLXVGDSKYFFAGW 726
           TR+ S   PSR   +   +  P    +LSL VG+  +    W
Sbjct: 217 TRFSSTVEPSRAETKRTVQFSPQYRVLLSLLVGEGNHEPINW 258


>SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 75

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 649 ATFDLXATVQYNCHTGYVTN 590
           ATF +   V+YNC  G++++
Sbjct: 28  ATFSILKLVEYNCFPGFISS 47


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 485 GYVTGFSTKPXFTSDIRPVPXSLSVDSQ 568
           GY+     KP    D+RP    L+VD+Q
Sbjct: 286 GYIKKLYMKPIVFEDLRPYLLKLNVDAQ 313


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +3

Query: 405 PTNSKPCPXXTTAXQPKVXQSAXTQPXGTSPGSPQNRGSQVISGPYQXACPSIAKHLA 578
           PT++KP    +TA      ++        SP S  +  S   +   Q A   +A+H A
Sbjct: 129 PTDNKPSASTSTAVPTTEARNTSITEPANSPSSSSSSASTKSTATTQSADYVVAEHFA 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,930,439
Number of Sequences: 5004
Number of extensions: 30833
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)