Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_F05
         (831 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53344-4|AAA96225.2|  575|Caenorhabditis elegans Hypothetical pr...    65   7e-11
Z75533-3|CAA99822.1|  868|Caenorhabditis elegans Hypothetical pr...    38   0.009
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    31   0.77 
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    29   5.4  

>U53344-4|AAA96225.2|  575|Caenorhabditis elegans Hypothetical
           protein T07H6.5 protein.
          Length = 575

 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 40/124 (32%), Positives = 50/124 (40%), Gaps = 4/124 (3%)
 Frame = -3

Query: 733 PTTSLQRNIYCPXPPTIEHXRHSVLPEQATFDLXATVQYNCHTGYV---TNGFPRAKCLA 563
           P   LQ  + C  PP I    H        +DL A V YNC  GY      G   +KCL 
Sbjct: 69  PVCRLQ--LKCGPPPEIPFAVHDGSSFSGEYDLDAEVAYNCIPGYHKFNAKGLSISKCLL 126

Query: 562 I-DGQAXWYGPDITCEPRFCGEPGDVPXGWVXADCXTFGCXAVVXXGQGXEXVGXAERXC 386
                A W+GPD+ C+ R C +PGD+  G    D   +          G   VG   R C
Sbjct: 127 NRKNVAQWFGPDLRCKARACPDPGDIENGLREGDTFEYPHHVKYSCNPGFLLVGSTSRQC 186

Query: 385 QXDG 374
             +G
Sbjct: 187 SSNG 190



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 29/110 (26%), Positives = 45/110 (40%)
 Frame = -3

Query: 703 CPXPPTIEHXRHSVLPEQATFDLXATVQYNCHTGYVTNGFPRAKCLAIDGQAXWYGPDIT 524
           C  P +  H +  V+    T+   + V Y+C  GY   G  +  CLA   +  W G +  
Sbjct: 204 CSRPSSPLHGK--VVGSSLTYQ--SVVTYSCDHGYRLVGQVQRICLA---EGIWGGNEPR 256

Query: 523 CEPRFCGEPGDVPXGWVXADCXTFGCXAVVXXGQGXEXVGXAERXCQXDG 374
           CE   C     +P G++     +FG  AV    +     G ++  C  DG
Sbjct: 257 CEEIRCSVLPTLPNGYIEGSETSFGAVAVFRCLETMTHEGASKAKCMEDG 306



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -3

Query: 631 ATVQYNCHTGYVTNGFPRAKCLAIDGQAXWYGPDITCEPRF-CGEPGDVP 485
           +  +Y C+ GY+  G  + +C A      W      C  +  CG P ++P
Sbjct: 38  SNAEYGCNKGYILVGASQRRCQA---NKEWSSSQPVCRLQLKCGPPPEIP 84


>Z75533-3|CAA99822.1|  868|Caenorhabditis elegans Hypothetical
           protein C54G4.4 protein.
          Length = 868

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 25/92 (27%), Positives = 32/92 (34%), Gaps = 4/92 (4%)
 Frame = -3

Query: 625 VQYNCHTGYVTNGFP----RAKCLAIDGQAXWYGPDITCEPRFCGEPGDVPXGWVXADCX 458
           V+Y C  G+     P    R+          W G + TCE   CG P  +  G V  +  
Sbjct: 563 VEYECSNGWHLANSPSPSYRSLRRVCQSDGIWSGSEPTCELVDCGRPPLIANGRVDVESS 622

Query: 457 TFGCXAVVXXGQGXEXVGXAERXCQXDGXXAP 362
           TF   A     QG   +G     C   G   P
Sbjct: 623 TFESAANYTCHQGFRLIGPESLMCGDRGEWQP 654



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -3

Query: 736 WPTTSLQRNIYCPXPPTIEHXRHSVLPEQATFDLXATVQYNCHTGYVTNGFPRAKCLAID 557
           +P TS   +IYC   P +    H +  E   +      +Y+C  G+   G     CL+ D
Sbjct: 150 FPPTSPISHIYC-LQPYVPENAHVIFNEPGPYATDTVAKYSCALGFDLIGSEERTCLS-D 207

Query: 556 G 554
           G
Sbjct: 208 G 208


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
            protein F47C12.1 protein.
          Length = 1827

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
 Frame = -3

Query: 709  IYCPXPPTIEHXRHSVLPEQATFDLXATVQYNCHTGYVTNGFPRA--KCLAIDGQAXWYG 536
            I CP PPT+    ++   +     + +T+++ C   Y   G   A  + +     A W  
Sbjct: 826  IECPAPPTMPGAVYN--GDVTDRKMGSTLEFTCRQPYTVVGRSSAGDQNIKCSPDATWDL 883

Query: 535  PDITCEPRFCGEPGDVPXGWVXADCXTFGCXA 440
             D+ CE   C +PG    G V  +    G  A
Sbjct: 884  GDLRCEGPVCVDPGYPYDGQVDLESVEEGAIA 915


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 5/85 (5%)
 Frame = +3

Query: 321 TXPFSPXTQXGTXLGAXXPSXWQXRSAXPTNSKPCPXXTTAXQPKVXQSAXTQPXGTS-- 494
           T P++P  Q  T      P     R    T  +  P    + QP    S    P G    
Sbjct: 328 TTPYNPSAQYPTGKRGSHPGFGPQRPRPGTRPRGNPCDQCSAQPNHCPSGPPGPRGRPGP 387

Query: 495 ---PGSPQNRGSQVISGPYQXACPS 560
              PG    RG + ++G Y    PS
Sbjct: 388 PGFPGQDGPRGLRGLNGGYSGVQPS 412


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,150,669
Number of Sequences: 27780
Number of extensions: 199798
Number of successful extensions: 442
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)