Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_F02
(820 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 145 8e-36
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 145 8e-36
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.2
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 5.6
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha... 26 7.4
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 26 7.4
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 145 bits (351), Expect = 8e-36
Identities = 97/238 (40%), Positives = 124/238 (52%), Gaps = 1/238 (0%)
Frame = -2
Query: 819 RXLPXTQMKLLNQRQKKVHIMEIQXNRXYRRGQSEMXQRTFWRTYPCRFCVCPR*ND*LH 640
R L TQ++ QKK H+MEIQ N + E + F +T + N+ +
Sbjct: 159 RVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTF--EQNEMID 216
Query: 639 WCH-PRXKDTKVSLLVGTPKKLPP*DTPRXLGKLPALELGILLGCRSXXXXXXXXXXXXX 463
R K + + K+LP T R L K+ + +
Sbjct: 217 VIGVTRGKGNEGTTARWGTKRLPR-KTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHR 275
Query: 462 XXXXXXIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCC 283
IYRIG G D K NAST++D +EK ITPMGGF YG V NDFVM+ G
Sbjct: 276 TQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGAT 328
Query: 282 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 109
GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 329 PGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 77.4 bits (182), Expect = 2e-15
Identities = 34/61 (55%), Positives = 43/61 (70%)
Frame = -1
Query: 628 KXKGYKGVTSRWHTKEATPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNQ 449
+ KG +G T+RW TK H + LRKVACIGAWHP+ V +TVARAG GY HRT++N
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTH-RGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNS 280
Query: 448 E 446
+
Sbjct: 281 K 281
Score = 63.7 bits (148), Expect = 3e-11
Identities = 31/74 (41%), Positives = 47/74 (63%)
Frame = -3
Query: 776 KRRFTLWKSXLTGGTVEDKVKWXREHFGEPIPVDSVFAQDEMIDCIGVTQGQRIQRCHFS 597
+++ L + + GG+V DKV+W REHF + + + S F Q+EMID IGVT+G+ +
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232
Query: 596 LAHQRSYPRKTHQG 555
+R PRKTH+G
Sbjct: 233 WGTKR-LPRKTHRG 245
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 145 bits (351), Expect = 8e-36
Identities = 97/238 (40%), Positives = 124/238 (52%), Gaps = 1/238 (0%)
Frame = -2
Query: 819 RXLPXTQMKLLNQRQKKVHIMEIQXNRXYRRGQSEMXQRTFWRTYPCRFCVCPR*ND*LH 640
R L TQ++ QKK H+MEIQ N + E + F +T + N+ +
Sbjct: 159 RVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTF--EQNEMID 216
Query: 639 WCH-PRXKDTKVSLLVGTPKKLPP*DTPRXLGKLPALELGILLGCRSXXXXXXXXXXXXX 463
R K + + K+LP T R L K+ + +
Sbjct: 217 VIGVTRGKGNEGTTARWGTKRLPR-KTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHR 275
Query: 462 XXXXXXIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCC 283
IYRIG G D K NAST++D +EK ITPMGGF YG V NDFVM+ G
Sbjct: 276 TQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGAT 328
Query: 282 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 109
GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 329 PGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386
Score = 77.4 bits (182), Expect = 2e-15
Identities = 34/61 (55%), Positives = 43/61 (70%)
Frame = -1
Query: 628 KXKGYKGVTSRWHTKEATPVRHTKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNQ 449
+ KG +G T+RW TK H + LRKVACIGAWHP+ V +TVARAG GY HRT++N
Sbjct: 222 RGKGNEGTTARWGTKRLPRKTH-RGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNS 280
Query: 448 E 446
+
Sbjct: 281 K 281
Score = 63.7 bits (148), Expect = 3e-11
Identities = 31/74 (41%), Positives = 47/74 (63%)
Frame = -3
Query: 776 KRRFTLWKSXLTGGTVEDKVKWXREHFGEPIPVDSVFAQDEMIDCIGVTQGQRIQRCHFS 597
+++ L + + GG+V DKV+W REHF + + + S F Q+EMID IGVT+G+ +
Sbjct: 173 QKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232
Query: 596 LAHQRSYPRKTHQG 555
+R PRKTH+G
Sbjct: 233 WGTKR-LPRKTHRG 245
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 130 HGYTQEGSYSRRSCGYHNPS 71
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 26.2 bits (55), Expect = 5.6
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +2
Query: 443 IFLVHFSTVMITFL--TSTSYSERHPRRMPSSNAGNFPKXLGVSYGGSFFGVPTRS 604
IFL ++ST+ + T + S H + A SY GS FG P+RS
Sbjct: 156 IFLSNWSTIFSSNASPTDSQLSPTHTSTIAELAASTLSIFPSGSYAGSTFGSPSRS 211
>SPAC328.07c |||heavy metal ion homeostasis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = +2
Query: 317 TSP*WGKPPIGVMDFSDRSYSVDALFLITLPSFLWIPCPIR*IFLVHFSTVMITFLTSTS 496
T+P + + + D+ +D + + T SF+W C L F ++T++ ST+
Sbjct: 131 TAPPYWDTTMVIPDYGSNEIYIDGMSVGTGFSFVWSACV---AILFPFVGFLVTYVLSTT 187
Query: 497 YSERH 511
+ R+
Sbjct: 188 HLGRY 192
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -3
Query: 458 NEPRKSIVLDKESTKRMAKLLKTMHLLSMICLRNPLHRWEVSP 330
N P + + ES ++L+T+H L+M+ +R L +E+ P
Sbjct: 135 NAPTSKLYMLSESPLSTKQILQTLHALNML-IRIRLSLYEIIP 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,415,564
Number of Sequences: 5004
Number of extensions: 72825
Number of successful extensions: 190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -