Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_E08
(779 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical pr... 41 0.001
X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha nicot... 41 0.001
X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic acety... 41 0.001
Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical pr... 37 0.014
X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit ... 37 0.014
U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha nicot... 37 0.014
X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic acety... 32 0.40
U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine r... 32 0.40
U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine r... 31 0.70
AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine... 31 0.70
U64843-16|AAX55689.1| 442|Caenorhabditis elegans Modulation of ... 31 0.92
U64843-15|AAF98227.2| 489|Caenorhabditis elegans Modulation of ... 31 0.92
U64843-14|AAM45353.1| 475|Caenorhabditis elegans Modulation of ... 31 0.92
AF303088-1|AAG36975.1| 489|Caenorhabditis elegans serotonin-gat... 31 0.92
Z81509-9|CAB04158.3| 503|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81463-12|CAB03855.3| 503|Caenorhabditis elegans Hypothetical p... 30 1.6
Y08637-1|CAA69927.1| 487|Caenorhabditis elegans nicotinic acety... 30 2.1
U23525-2|AAK71378.1| 487|Caenorhabditis elegans Acetylcholine r... 30 2.1
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 29 2.8
AC006816-3|AAK85510.3| 508|Caenorhabditis elegans Hypothetical ... 29 4.9
>Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical
protein F09E8.7 protein.
Length = 507
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Frame = -3
Query: 765 MQLDNWPNDXQTCTFKFGSGMHNSDE--MDFVIDKRI-YSMFE-SGAWDVTDLSSAVQSQ 598
+ ++ +P D Q C+ FGS +N DE +DF+ R+ +S + S WD+ D AV +
Sbjct: 165 IDVEFFPFDDQLCSLTFGSWTYNRDEIKLDFLTSDRVDFSEYSTSSIWDMMD-GPAVLTS 223
Query: 597 DRGEVEARV 571
DR +E ++
Sbjct: 224 DRSRIEFQI 232
>X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit protein.
Length = 507
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Frame = -3
Query: 765 MQLDNWPNDXQTCTFKFGSGMHNSDE--MDFVIDKRI-YSMFE-SGAWDVTDLSSAVQSQ 598
+ ++ +P D Q C+ FGS +N DE +DF+ R+ +S + S WD+ D AV +
Sbjct: 165 IDVEFFPFDDQLCSLTFGSWTYNRDEIKLDFLTSDRVDFSEYSTSSIWDMMD-GPAVLTS 223
Query: 597 DRGEVEARV 571
DR +E ++
Sbjct: 224 DRSRIEFQI 232
>X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 507
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Frame = -3
Query: 765 MQLDNWPNDXQTCTFKFGSGMHNSDE--MDFVIDKRI-YSMFE-SGAWDVTDLSSAVQSQ 598
+ ++ +P D Q C+ FGS +N DE +DF+ R+ +S + S WD+ D AV +
Sbjct: 165 IDVEFFPFDDQLCSLTFGSWTYNRDEIKLDFLTSDRVDFSEYSTSSIWDMMD-GPAVLTS 223
Query: 597 DRGEVEARV 571
DR +E ++
Sbjct: 224 DRSRIEFQI 232
>Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical
protein T08G11.5 protein.
Length = 493
Score = 37.1 bits (82), Expect = 0.014
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Frame = -3
Query: 765 MQLDNWPNDXQTCTFKFGSGMHNSDE--MDFV----IDKRIYSMFESGAWDVTDL-SSAV 607
+ ++ +P D Q CT FGS +N +E ++FV +D YS S WDV D+ +S V
Sbjct: 157 IDVEFFPFDEQVCTLVFGSWTYNENEIKLEFVQAELVDVSEYS--ASSIWDVIDVPASLV 214
Query: 606 QSQDRGEVEARV 571
+ R E + R+
Sbjct: 215 NKRSRIEFQVRI 226
>X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 493
Score = 37.1 bits (82), Expect = 0.014
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Frame = -3
Query: 765 MQLDNWPNDXQTCTFKFGSGMHNSDE--MDFV----IDKRIYSMFESGAWDVTDL-SSAV 607
+ ++ +P D Q CT FGS +N +E ++FV +D YS S WDV D+ +S V
Sbjct: 157 IDVEFFPFDEQVCTLVFGSWTYNENEIKLEFVQAELVDVSEYS--ASSIWDVIDVPASLV 214
Query: 606 QSQDRGEVEARV 571
+ R E + R+
Sbjct: 215 NKRSRIEFQVRI 226
>U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit precursor
protein.
Length = 493
Score = 37.1 bits (82), Expect = 0.014
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Frame = -3
Query: 765 MQLDNWPNDXQTCTFKFGSGMHNSDE--MDFV----IDKRIYSMFESGAWDVTDL-SSAV 607
+ ++ +P D Q CT FGS +N +E ++FV +D YS S WDV D+ +S V
Sbjct: 157 IDVEFFPFDEQVCTLVFGSWTYNENEIKLEFVQAELVDVSEYS--ASSIWDVIDVPASLV 214
Query: 606 QSQDRGEVEARV 571
+ R E + R+
Sbjct: 215 NKRSRIEFQVRI 226
>X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 575
Score = 32.3 bits (70), Expect = 0.40
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = -3
Query: 750 WPNDXQTCTFKFGSGMHNSDEM-----DFVIDKRIYSMFESGAWDVTDL 619
+P D Q CT FGS +NS+E+ + + +++ SG WDV D+
Sbjct: 192 FPFDEQCCTLVFGSWTYNSEEVRLHWYNNIQAVQLHDYSYSGIWDVIDV 240
>U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine
receptor protein 2 protein.
Length = 575
Score = 32.3 bits (70), Expect = 0.40
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = -3
Query: 750 WPNDXQTCTFKFGSGMHNSDEM-----DFVIDKRIYSMFESGAWDVTDL 619
+P D Q CT FGS +NS+E+ + + +++ SG WDV D+
Sbjct: 192 FPFDEQCCTLVFGSWTYNSEEVRLHWYNNIQAVQLHDYSYSGIWDVIDV 240
>U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine
receptor protein 22 protein.
Length = 434
Score = 31.5 bits (68), Expect = 0.70
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 765 MQLDNWPNDXQTCTFKFGSGMHNSDEMDF-VIDKRIYSMFESGAWDVTDLSSAVQSQDRG 589
M + ++P D Q C +FGS + + + F V+D + ++ WD+ ++ + G
Sbjct: 161 MSVLSFPFDVQLCALQFGSWSYQAHAISFNVLDTFVPKKSKNSEWDIVSFNATKMTTKYG 220
Query: 588 E 586
+
Sbjct: 221 D 221
>AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine
receptor (51.1 kD)(acr-22) protein.
Length = 434
Score = 31.5 bits (68), Expect = 0.70
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 765 MQLDNWPNDXQTCTFKFGSGMHNSDEMDF-VIDKRIYSMFESGAWDVTDLSSAVQSQDRG 589
M + ++P D Q C +FGS + + + F V+D + ++ WD+ ++ + G
Sbjct: 161 MSVLSFPFDVQLCALQFGSWSYQAHAISFNVLDTFVPKKSKNSEWDIVSFNATKMTTKYG 220
Query: 588 E 586
+
Sbjct: 221 D 221
>U64843-16|AAX55689.1| 442|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform c protein.
Length = 442
Score = 31.1 bits (67), Expect = 0.92
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 777 TPIXMQLDNWPNDXQTCTFKFGSGMHNSDEMD 682
+P + L +P D QTC F S HNS+E++
Sbjct: 157 SPCNLDLRQFPFDTQTCILIFESYSHNSEEVE 188
>U64843-15|AAF98227.2| 489|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform a protein.
Length = 489
Score = 31.1 bits (67), Expect = 0.92
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 777 TPIXMQLDNWPNDXQTCTFKFGSGMHNSDEMD 682
+P + L +P D QTC F S HNS+E++
Sbjct: 157 SPCNLDLRQFPFDTQTCILIFESYSHNSEEVE 188
>U64843-14|AAM45353.1| 475|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform b protein.
Length = 475
Score = 31.1 bits (67), Expect = 0.92
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 777 TPIXMQLDNWPNDXQTCTFKFGSGMHNSDEMD 682
+P + L +P D QTC F S HNS+E++
Sbjct: 157 SPCNLDLRQFPFDTQTCILIFESYSHNSEEVE 188
>AF303088-1|AAG36975.1| 489|Caenorhabditis elegans serotonin-gated
chloride channel protein.
Length = 489
Score = 31.1 bits (67), Expect = 0.92
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 777 TPIXMQLDNWPNDXQTCTFKFGSGMHNSDEMD 682
+P + L +P D QTC F S HNS+E++
Sbjct: 157 SPCNLDLRQFPFDTQTCILIFESYSHNSEEVE 188
>Z81509-9|CAB04158.3| 503|Caenorhabditis elegans Hypothetical
protein F21A3.7 protein.
Length = 503
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = -3
Query: 750 WPNDXQTCTFKFGSGMHNSDEMDFVIDKRIYSM---FESGAWDVTDLSSAVQS 601
+P D Q C+ FGS H++D + + + + S+ +++ W++ +S+V S
Sbjct: 89 FPFDVQQCSLLFGSWAHSNDSIKYSLYSQNLSLIDFYDNQEWELDTHNSSVHS 141
>Z81463-12|CAB03855.3| 503|Caenorhabditis elegans Hypothetical
protein F21A3.7 protein.
Length = 503
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = -3
Query: 750 WPNDXQTCTFKFGSGMHNSDEMDFVIDKRIYSM---FESGAWDVTDLSSAVQS 601
+P D Q C+ FGS H++D + + + + S+ +++ W++ +S+V S
Sbjct: 89 FPFDVQQCSLLFGSWAHSNDSIKYSLYSQNLSLIDFYDNQEWELDTHNSSVHS 141
>Y08637-1|CAA69927.1| 487|Caenorhabditis elegans nicotinic
acetylcholine receptorsubunit ACR-3 protein.
Length = 487
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = -3
Query: 765 MQLDNWPNDXQTCTFKFGSGMHNSDE--MDFVIDKR---IYSMFESGAWDVTD 622
+ ++ +P D Q C+ FGS DE + ++ KR + SG WD+ D
Sbjct: 153 IDVEFFPFDEQVCSLTFGSWTFRKDELQLSYLSGKRHVELNDYLPSGVWDLID 205
>U23525-2|AAK71378.1| 487|Caenorhabditis elegans Acetylcholine
receptor protein 3 protein.
Length = 487
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = -3
Query: 765 MQLDNWPNDXQTCTFKFGSGMHNSDE--MDFVIDKR---IYSMFESGAWDVTD 622
+ ++ +P D Q C+ FGS DE + ++ KR + SG WD+ D
Sbjct: 153 IDVEFFPFDEQVCSLTFGSWTFRKDELQLSYLSGKRHVELNDYLPSGVWDLID 205
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 750 WPNDXQTCTFKFGSGMHNSDEMDFVIDKRIYSMF-ESGAWDVTD 622
+P D Q C FKFGS + D++ +S F +G W + D
Sbjct: 153 FPFDEQVCYFKFGSWTYTRDKIQLEKGDFDFSEFIPNGEWIIID 196
>AC006816-3|AAK85510.3| 508|Caenorhabditis elegans Hypothetical
protein Y71D11A.5 protein.
Length = 508
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = -3
Query: 774 PIXMQLDNWPNDXQTCTFKFGSGMHNSDE--MDFVID--KRIYSMFESGAWDVTDL 619
P M L +P D TC+ F S +N+DE MD+ ++ +++ E +++ D+
Sbjct: 189 PCIMDLTKFPFDNVTCSLTFESFNYNTDEVKMDWSVNGVQKMRDKMELADYELVDI 244
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,203,769
Number of Sequences: 27780
Number of extensions: 218425
Number of successful extensions: 731
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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