Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_E07
         (805 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
 Frame = -2

Query: 708 PPSPAISGTSTRSSNPRIPYT----NHPR 634
           PPS ++S        PRI +T    +HPR
Sbjct: 130 PPSVSLSSPPREPGTPRINFTKLKRHHPR 158


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 15/62 (24%), Positives = 20/62 (32%)
 Frame = -1

Query: 700 PCDFGYINPIIKSPDSIHQPPQT*HPFPSIP*RRTRKEFAPGLKPPLSSEAPSAYLTPSS 521
           P     +   ++SP     PP    P P IP         P   P +    P+    PS 
Sbjct: 391 PVSMSALVSAVRSPAGGQLPPSAGAPMPPIPNMSNMSGMPP--LPNMPGSMPTMPTMPSM 448

Query: 520 LG 515
            G
Sbjct: 449 AG 450


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 732 AVSPLCIKPPSPAISGTSTRSSN 664
           A SP  ++  SPA SGTS+ +++
Sbjct: 915 ASSPGLLERASPAFSGTSSPTNS 937


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,187
Number of Sequences: 438
Number of extensions: 4816
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)