Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_D22
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0601 + 4423831-4424115,4424278-4424406,4424615-4424779,442...    30   2.8  
11_02_0123 - 8550193-8550213,8550434-8550682,8550787-8550834,855...    29   4.9  
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406...    29   4.9  
06_03_0108 - 16732215-16732572,16732623-16732741,16733344-167333...    29   4.9  
03_05_0958 - 29200048-29200731                                         29   4.9  
02_05_0040 + 25341418-25341810                                         29   4.9  
12_02_0954 - 24757417-24758214                                         29   6.5  
07_03_0658 - 20366559-20367562,20367745-20367937                       29   6.5  
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137           29   6.5  
06_01_0293 - 2139421-2139600,2139716-2140471,2140830-2140935,214...    28   8.5  
01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638...    28   8.5  

>03_01_0601 +
           4423831-4424115,4424278-4424406,4424615-4424779,
           4424925-4425230,4425387-4425448,4425776-4426145,
           4426427-4426555,4427233-4427397,4427534-4427839,
           4427928-4428068
          Length = 685

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +2

Query: 599 RPRLESGGWIGPGVFYGGQNSVDG----VSRRSDGSL-NELCLYRPPTVHAYRPFA 751
           +P L SGGWIG G   GG +++ G    V   + G L   LC       HA R FA
Sbjct: 332 KPALTSGGWIGGG---GGDSTMGGGMRVVVTGATGYLGGRLCAALAAAGHAVRAFA 384


>11_02_0123 -
           8550193-8550213,8550434-8550682,8550787-8550834,
           8550939-8551025,8551104-8551184,8551264-8551368,
           8551464-8551556,8551635-8551715,8551794-8551895,
           8552144-8552224,8552304-8552405,8552499-8552834,
           8552920-8553006,8553275-8553493,8553575-8553769
          Length = 628

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 874 NGVIXVDSRDFQXPPHDVNGSLFGTKINGTFQNVVTTPPH*RKW 743
           NG + V++ D    P+D +GSL G+ +    QN    P H  KW
Sbjct: 6   NGRVIVET-DENGVPNDRSGSLLGSYLAKMAQNSTFAPLHIPKW 48


>07_01_0004 +
           35300-35533,35617-35732,39044-39287,39451-40578,
           40657-40833
          Length = 632

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 536 YRTSLYKKAGWYRSGIPRALCDIHCAGADSLSLISWW 426
           Y+TSL  + G ++ G+PR  C    AG D L     W
Sbjct: 285 YQTSLSPRCGAFKDGVPRMSC-AKIAGRDKLKRRGDW 320


>06_03_0108 -
           16732215-16732572,16732623-16732741,16733344-16733393,
           16734619-16734820
          Length = 242

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 605 RLESGGWIGPGVFYGGQNSVDGVSRRSDGS 694
           R  SGG  GP V YGG+    GV R+ D S
Sbjct: 140 RRGSGG-TGPAVDYGGRGDSGGVRRKEDSS 168


>03_05_0958 - 29200048-29200731
          Length = 227

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 581 KLLSVPRPRLESGGWIGPGVFYGGQNSVDGVSRRSDG 691
           +L+   R R +SGG  G G    G +S DG S+ SDG
Sbjct: 150 RLIEYVRSRNKSGGGGGGGGVAAGCSSSDGDSKSSDG 186


>02_05_0040 + 25341418-25341810
          Length = 130

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 114 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 212
           RRAAP   CG S+   S  +RR  AP    S P
Sbjct: 74  RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106


>12_02_0954 - 24757417-24758214
          Length = 265

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +1

Query: 58  TLERPRPAARAHGAIVLAVGEQRLPEAAG---IPDQK*APVVVGSRH 189
           T +RPRP+  A  A+  A+       A+G      Q+ AP VV S+H
Sbjct: 100 TRKRPRPSRPARAAVAAAIAAAAAASASGSQIAAQQQQAPPVVMSQH 146


>07_03_0658 - 20366559-20367562,20367745-20367937
          Length = 398

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +1

Query: 169 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADL 336
           V+ G+ H + M L +HG    V  + L+P        L    FRQ       + DL
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDL 306


>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
          Length = 542

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 599 AGRITISHRKQL*P-LGLFR*HYRTSLYKKAGWY 501
           AG + +SH   + P L +FR  ++  L+K  GWY
Sbjct: 130 AGFLVLSHHAGVPPSLAVFRHFFKLCLFKSNGWY 163


>06_01_0293 -
           2139421-2139600,2139716-2140471,2140830-2140935,
           2140999-2141249,2141342-2141443,2141557-2141876,
           2142350-2142546,2143668-2143786,2143876-2143997,
           2144877-2145081
          Length = 785

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 818 WEFVWHQNQRDFPKCRNNSAPLTQMXGRRVRWEV 717
           +EF+ + +  D  + RNN+ PLT     R+ WEV
Sbjct: 501 YEFMENGSLDDMLQRRNNTPPLTWFDRFRIAWEV 534


>01_07_0353 +
           42962769-42962972,42963062-42963138,42963571-42963817,
           42963907-42964476,42964998-42965171,42965514-42965640,
           42965719-42965828,42966707-42966907,42966999-42967966,
           42968110-42968358,42968760-42969105
          Length = 1090

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +2

Query: 635 GVFYGGQNSVDGVSRRSDGSLNELCLYRPPTVHAYRPFASMGRSCYDI 778
           G  Y  ++ VDG S R+    N       P VH Y      G++  D+
Sbjct: 719 GSVYDSESEVDGSSDRNAADSNTKDNQEDPLVHVYDASVDQGQTARDV 766


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,225,407
Number of Sequences: 37544
Number of extensions: 560501
Number of successful extensions: 1379
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)