Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_D18
(967 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 0.62
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 0.62
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 1.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 2.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 21 5.6
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 23 9.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 23 9.2
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 24.6 bits (51), Expect(2) = 0.62
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 931 PPPPPPPXXXE 963
PPPPPPP E
Sbjct: 190 PPPPPPPPAVE 200
Score = 23.4 bits (48), Expect(2) = 0.62
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 814 PXPPPPPP 837
P PPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 23.4 bits (48), Expect(2) = 7.9
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 814 PXPPPPPP 837
P PPPPPP
Sbjct: 190 PPPPPPPP 197
Score = 20.6 bits (41), Expect(2) = 7.9
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +1
Query: 931 PPPPPPP 951
P PPPPP
Sbjct: 236 PAPPPPP 242
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 24.6 bits (51), Expect(2) = 0.62
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 931 PPPPPPPXXXE 963
PPPPPPP E
Sbjct: 1096 PPPPPPPAEVE 1106
Score = 23.4 bits (48), Expect(2) = 0.62
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 814 PXPPPPPP 837
P PPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 9.1
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 932 PPPPPPPXG 958
PPPPPPP G
Sbjct: 761 PPPPPPPPG 769
Score = 23.8 bits (49), Expect(2) = 1.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 931 PPPPPPP 951
PPPPPPP
Sbjct: 777 PPPPPPP 783
Score = 23.4 bits (48), Expect(2) = 1.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 814 PXPPPPPP 837
P PPPPPP
Sbjct: 761 PPPPPPPP 768
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 9.1
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 932 PPPPPPPXG 958
PPPPPPP G
Sbjct: 9 PPPPPPPPG 17
Score = 23.4 bits (48), Expect(2) = 2.1
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 814 PXPPPPPP 837
P PPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 22.6 bits (46), Expect(2) = 2.1
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 820 PPPPPPXXF 846
PPPPPP F
Sbjct: 10 PPPPPPPGF 18
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 21.0 bits (42), Expect(3) = 5.6
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +1
Query: 820 PPPPPP 837
PPPPPP
Sbjct: 338 PPPPPP 343
Score = 21.0 bits (42), Expect(3) = 5.6
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +1
Query: 931 PPPPPP 948
PPPPPP
Sbjct: 361 PPPPPP 366
Score = 20.6 bits (41), Expect(3) = 5.6
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +1
Query: 814 PXPPPPP 834
P PPPPP
Sbjct: 311 PPPPPPP 317
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 23.4 bits (48), Expect(2) = 9.1
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2
Query: 957 PXGGGGGGG 931
P GGGGGGG
Sbjct: 45 PTGGGGGGG 53
Score = 20.6 bits (41), Expect(2) = 9.1
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 837 GGGGGGXG 814
GGGGGG G
Sbjct: 48 GGGGGGLG 55
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 23.4 bits (48), Expect(2) = 9.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 814 PXPPPPPP 837
P PPPPPP
Sbjct: 3 PAPPPPPP 10
Score = 20.6 bits (41), Expect(2) = 9.2
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +1
Query: 931 PPPPPPP 951
PPPPP P
Sbjct: 6 PPPPPAP 12
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,690,940
Number of Sequences: 5004
Number of extensions: 20195
Number of successful extensions: 289
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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