Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_D12
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0067 - 20460206-20460703,20461255-20461530 35 0.059
11_02_0073 - 8020401-8020512,8020594-8020679,8020761-8020921,802... 31 0.73
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 31 1.3
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 30 2.2
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.2
11_04_0415 - 17395988-17396161,17397349-17397444,17397489-173980... 29 5.1
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474... 29 5.1
07_03_1619 + 28174991-28175804,28175945-28175968,28176075-281761... 28 9.0
01_01_1141 + 9052511-9052573,9052626-9052928 28 9.0
>03_05_0067 - 20460206-20460703,20461255-20461530
Length = 257
Score = 35.1 bits (77), Expect = 0.059
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Frame = -2
Query: 342 PPPXG--GXXFSPXFXXGGPPPPXPX---GXXXKXALWGGPSPP 226
PPP G P + GPPPP P G A+WG P PP
Sbjct: 6 PPPQWAMGPPPPPQYFQAGPPPPPPQYFQGAHPPAAMWGQPPPP 49
>11_02_0073 -
8020401-8020512,8020594-8020679,8020761-8020921,
8021196-8021400,8021664-8021697,8022352-8022422,
8023363-8023542,8023625-8023765,8023859-8023975,
8024074-8024469
Length = 500
Score = 31.5 bits (68), Expect = 0.73
Identities = 22/76 (28%), Positives = 27/76 (35%)
Frame = +1
Query: 241 PPKGXFXSXTXGXWGGGAPXXKXXGKXXPPXRGGXPXPXXXXXKKKXXPRXKKGAXXNXX 420
PP G + G +GGG P G P G P P P + G
Sbjct: 413 PPYGGYMGDPYGAYGGGGP-----GFNQPMIYGRGPAPAGMRMVPMVLPDGRLG------ 461
Query: 421 XSFXXQXTGGVXPPPP 468
+ Q GG+ PPPP
Sbjct: 462 --YVLQQPGGIPPPPP 475
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -2
Query: 342 PPPXGGXXFSPXFXXGGPPPPXPXGXXXKXALWGGPSPP 226
PPP +P GP PP P G + GGP PP
Sbjct: 351 PPPPPAAPAAPRPPGPGPGPPPPPGAAGRGG--GGPPPP 387
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = -2
Query: 342 PPPXGGXXFSPXFXXGGPPPPXPXGXXXKXALWGGPSPP 226
PPP + G PPPP P GP PP
Sbjct: 333 PPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPP 371
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = -2
Query: 342 PPPXG-GXXFSPXFXXGGPPPPXPXGXXXKXALWGGPSPP 226
PPP G G P G P PP P G GGP PP
Sbjct: 1187 PPPRGHGGVGGPPTPPGAPAPPMPPGVP------GGPPPP 1220
Score = 25.4 bits (53), Expect(2) = 5.4
Identities = 19/67 (28%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Frame = +1
Query: 166 PXPXXGGAPXXKKKXPVXKXGGGRXPPKGXFXSXTXGXWGGGAPXXKXXGKXXPP----X 333
P P GG P+ GG + PP G P G PP
Sbjct: 1111 PPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGV-PPPPPVGGLGGPPAPPPPAGF 1169
Query: 334 RGGXPXP 354
RGG P P
Sbjct: 1170 RGGTPPP 1176
Score = 21.4 bits (43), Expect(2) = 5.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 445 GGVXPPPP 468
GGV PPPP
Sbjct: 1180 GGVAPPPP 1187
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = -2
Query: 342 PPPXGGXXFSPXFXXGGPPPPXPXGXXXKXALWGGPSPP 226
PPP G P PPPP P G GGP PP
Sbjct: 347 PPPAKGPPPPPPPKGPSPPPPPPPGGKK-----GGPPPP 380
>11_04_0415 -
17395988-17396161,17397349-17397444,17397489-17398026,
17398106-17398422
Length = 374
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = +2
Query: 227 GGEGPPQRAFFXXKPXGXGGGGPPXXKXGEKXXPPXGGGXP 349
GG G R F P G GGGGP G GGG P
Sbjct: 10 GGGGGGPRGFGGGGPRGFGGGGPRGFGGGGPRG--FGGGGP 48
>09_04_0424 +
17444261-17444665,17445974-17446367,17447367-17447425,
17447507-17447637,17447737-17447833,17447936-17448100
Length = 416
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = -2
Query: 339 PPXGGXXFSPXFXXGGPPPPXPXGXXXKXAL-WGGPSP 229
PP F P G PPPP P A+ G P+P
Sbjct: 60 PPQFAPHFVPFHAVGPPPPPQPRAAPPPVAVAMGSPAP 97
>07_03_1619 +
28174991-28175804,28175945-28175968,28176075-28176170,
28176285-28176466,28176623-28176836,28177262-28177499,
28177709-28177865,28177950-28178246
Length = 673
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 239 PPQRAFFXXKPXGXGGGGPP 298
P Q A+F +P G GG PP
Sbjct: 641 PKQSAYFNVRPSGGGGDAPP 660
>01_01_1141 + 9052511-9052573,9052626-9052928
Length = 121
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 281 GGGGPPXXKXGEKXXPPXGGG 343
GGGG P + GE P GGG
Sbjct: 63 GGGGRPARRRGESRRPRDGGG 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,974,735
Number of Sequences: 37544
Number of extensions: 400330
Number of successful extensions: 840
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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