Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_D06
         (814 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   1.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   4.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.4  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 313 SLISNLSNTCDLTPLPEWSCEQSAWWGACG 224
           SL +N   +  LTP P W+  ++   GACG
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACG 124


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 724 FKXGFRXHNSDEMDFVIDQKNIQYVR 647
           FK G+  H +    + +D KN++Y R
Sbjct: 662 FKYGYVSHANQRNMYKLDLKNMKYTR 687


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -1

Query: 748 PXNKQTCTFKXGFRXHNSDEMDFVI-DQKN 662
           P ++QTC  K G    N D++   + + KN
Sbjct: 159 PFDQQTCIMKFGSWTFNGDQVSLALYNNKN 188


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 657 CIFFWSITKSISSLLCXLKPXLNV 728
           C+FF +   S + +LC   P  N+
Sbjct: 434 CVFFLTTIVSTTVILCGSPPSANI 457


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 329 WRAAAACTRDTRGALPASPSRLDT 400
           W    ACT  T G +  +PS  DT
Sbjct: 487 WVFTLACTAGTLGIIFQAPSLYDT 510


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,353
Number of Sequences: 438
Number of extensions: 1744
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)