Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_C12
(1201 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0490 + 22672241-22674679 26 0.59
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 26 1.7
03_01_0515 - 3864796-3865425 30 3.1
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 24 7.6
12_02_1174 - 26696869-26698191 29 9.6
12_02_0299 - 17051570-17052474,17053542-17053755 29 9.6
08_01_0060 - 413088-413999 29 9.6
03_06_0411 + 33741903-33742163,33742990-33743168,33743342-337434... 29 9.6
02_04_0567 - 23914330-23914461,23915016-23915136,23915954-239160... 29 9.6
>01_05_0490 + 22672241-22674679
Length = 812
Score = 25.8 bits (54), Expect(2) = 0.59
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 32 PPTPPXPPPP 3
PP PP PPPP
Sbjct: 638 PPQPPPPPPP 647
Score = 25.4 bits (53), Expect(2) = 0.59
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -3
Query: 59 NPXXXXQXXPPTPPXPPP 6
NP PP PP PPP
Sbjct: 598 NPAPAPPRRPPPPPPPPP 615
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 25.8 bits (54), Expect(2) = 1.7
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 32 PPTPPXPPPP 3
PP PP PPPP
Sbjct: 367 PPPPPRPPPP 376
Score = 23.8 bits (49), Expect(2) = 1.7
Identities = 9/23 (39%), Positives = 9/23 (39%)
Frame = -3
Query: 74 PXXFXNPXXXXQXXPPTPPXPPP 6
P P PP PP PPP
Sbjct: 349 PKLMPPPPPPPPPPPPPPPPPPP 371
>03_01_0515 - 3864796-3865425
Length = 209
Score = 30.3 bits (65), Expect = 3.1
Identities = 17/55 (30%), Positives = 17/55 (30%)
Frame = -3
Query: 167 PPTXXDPXIXXXPXVAAXSXXPXXGAQXXSXPXXFXNPXXXXQXXPPTPPXPPPP 3
PPT P P S P P P PP PP PPPP
Sbjct: 42 PPTEASPPPLAPPPSVTSSPPPPAAGPLMPPPP----PPPSVTSSPPPPPLPPPP 92
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 23.8 bits (49), Expect(2) = 7.6
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = -3
Query: 56 PXXXXQXXPPTPPXPPP 6
P + PP PP PPP
Sbjct: 610 PILPNRSVPPPPPPPPP 626
Score = 23.4 bits (48), Expect(2) = 7.6
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 29 PTPPXPPPP 3
P PP PPPP
Sbjct: 663 PAPPPPPPP 671
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.7 bits (61), Expect = 9.6
Identities = 15/59 (25%), Positives = 16/59 (27%)
Frame = -3
Query: 182 PXXGXPPTXXDPXIXXXPXVAAXSXXPXXGAQXXSXPXXFXNPXXXXQXXPPTPPXPPP 6
P PP P P P P P PP+PP PPP
Sbjct: 137 PPHRPPPVKPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPP 195
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 28.7 bits (61), Expect = 9.6
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 74 PXXFXNPXXXXQXXPPTPPXPPPP 3
P F P PP+PP PPPP
Sbjct: 272 PPAFPFPHLPPIFSPPSPPPPPPP 295
>08_01_0060 - 413088-413999
Length = 303
Score = 28.7 bits (61), Expect = 9.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 59 NPXXXXQXXPPTPPXPPPP 3
+P Q PP PP PPPP
Sbjct: 22 HPLLFDQPPPPPPPPPPPP 40
>03_06_0411 +
33741903-33742163,33742990-33743168,33743342-33743426,
33743506-33743822,33743983-33744106,33744810-33744902,
33745296-33745364,33745654-33745704,33745705-33745854,
33745904-33746125,33746413-33746568,33746716-33746823,
33746992-33747126,33747209-33747364,33747544-33747664,
33748182-33748267
Length = 770
Score = 28.7 bits (61), Expect = 9.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -3
Query: 59 NPXXXXQXXPPTPPXPPPP 3
NP PP PP PPPP
Sbjct: 407 NPQEQQDQQPPPPPPPPPP 425
>02_04_0567 -
23914330-23914461,23915016-23915136,23915954-23916048,
23916131-23916301,23917291-23917380,23917636-23918139
Length = 370
Score = 28.7 bits (61), Expect = 9.6
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -3
Query: 74 PXXFXNPXXXXQXXPPTPPXPPPP 3
P F P PP PP PPPP
Sbjct: 32 PFTFLCPPPPPPPPPPPPPPPPPP 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,156,532
Number of Sequences: 37544
Number of extensions: 73272
Number of successful extensions: 2675
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2059
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3666490380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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