Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_C12
         (1201 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    24   7.1  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    24   7.2  
U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    29   8.6  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    29   8.6  

>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 24.2 bits (50), Expect(2) = 7.1
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -3

Query: 65  FXNPXXXXQXXPPTPPXPPP 6
           +  P       PP PP PPP
Sbjct: 598 YGTPENRPHAVPPPPPPPPP 617



 Score = 23.0 bits (47), Expect(2) = 7.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 29  PTPPXPPPP 3
           P PP PPPP
Sbjct: 649 PPPPPPPPP 657


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 24.2 bits (50), Expect(2) = 7.2
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -3

Query: 65  FXNPXXXXQXXPPTPPXPPP 6
           +  P       PP PP PPP
Sbjct: 424 YGTPENRPHAVPPPPPPPPP 443



 Score = 23.0 bits (47), Expect(2) = 7.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 29  PTPPXPPPP 3
           P PP PPPP
Sbjct: 456 PPPPPPPPP 464


>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 15/54 (27%), Positives = 18/54 (33%)
 Frame = -3

Query: 167 PPTXXDPXIXXXPXVAAXSXXPXXGAQXXSXPXXFXNPXXXXQXXPPTPPXPPP 6
           PP          P + + S     GA   + P     P        PTPP PPP
Sbjct: 125 PPAPVPAVEGKKPSIVSSSSFSHHGATSSAPPPPPPPPPVSVPSSKPTPPPPPP 178


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 15/54 (27%), Positives = 18/54 (33%)
 Frame = -3

Query: 167 PPTXXDPXIXXXPXVAAXSXXPXXGAQXXSXPXXFXNPXXXXQXXPPTPPXPPP 6
           PP          P + + S     GA   + P     P        PTPP PPP
Sbjct: 125 PPAPVPAVEGKKPSIVSSSSFSHHGATSSAPPPPPPPPPVSVPSSKPTPPPPPP 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,196,541
Number of Sequences: 27780
Number of extensions: 41645
Number of successful extensions: 896
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3297288728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)