Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_C09
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 150 3e-37
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 147 2e-36
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 38 0.002
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 28 1.4
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.4
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.5
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 7.3
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 150 bits (363), Expect = 3e-37
Identities = 75/130 (57%), Positives = 89/130 (68%)
Frame = -2
Query: 712 FXRTPGXTXIAXRFTPGXFNKPDPKLHSXEXRXLIVLDPAQDHQPITEASYVNIPVIALC 533
F G T IA RFTPG F + + E R ++V DP D Q I EAS+VNIPVIALC
Sbjct: 92 FAAHTGATAIAGRFTPGNFTNYITRTYR-EPRLIVVTDPRADAQAIKEASFVNIPVIALC 150
Query: 532 NTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPE 353
+TDS L VDIAIP N K SIGL+W+LLAREVLR+RG L R WDV+ DL+FYRDPE
Sbjct: 151 DTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPE 210
Query: 352 ESEKDEQQAK 323
E E++E+ K
Sbjct: 211 EVEREEEAKK 220
Score = 36.3 bits (80), Expect = 0.005
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -1
Query: 800 AGSXFXTHRXPRXLFVIXSRPFGQRAVLKFPAHTXXYAYCGTF 672
A T P + V+ +R +G RAVLKF AHT A G F
Sbjct: 63 AARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRF 105
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 147 bits (356), Expect = 2e-36
Identities = 74/128 (57%), Positives = 88/128 (68%)
Frame = -2
Query: 712 FXRTPGXTXIAXRFTPGXFNKPDPKLHSXEXRXLIVLDPAQDHQPITEASYVNIPVIALC 533
F G T IA RFTPG F + + E R +IV DP D Q I EAS+VNIPVIALC
Sbjct: 93 FAAHTGATAIAGRFTPGNFTNYITRTYR-EPRLIIVTDPRADAQAIKEASFVNIPVIALC 151
Query: 532 NTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPE 353
+TDS L VD+AIP N K SIGL W+LLAREVLRLRG + R W+V+ DL+FYRDPE
Sbjct: 152 DTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPE 211
Query: 352 ESEKDEQQ 329
E E++E+Q
Sbjct: 212 EIEREEEQ 219
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/43 (48%), Positives = 23/43 (53%)
Frame = -1
Query: 800 AGSXFXTHRXPRXLFVIXSRPFGQRAVLKFPAHTXXYAYCGTF 672
A T P + VI SRP+G RAVLKF AHT A G F
Sbjct: 64 AARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRF 106
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = -2
Query: 613 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 437
+++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL+R
Sbjct: 183 MVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +3
Query: 372 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 470
N+S+T +++ SR ST RS STS AN H K E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 574 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 464
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 466 IGLMWWLLAREVLRLRGVLPRDQRWD 389
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -3
Query: 411 FPVTSAGML--WLICSSTVTLKKVKRM 337
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,576
Number of Sequences: 5004
Number of extensions: 50240
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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