Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_C05
(836 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 287 1e-78
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 285 5e-78
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 105 8e-24
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 54 3e-08
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 37 0.003
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 33 0.066
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.12
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 31 0.20
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.27
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 31 0.27
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.35
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.82
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 29 0.82
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 29 1.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 29 1.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.4
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 5.8
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.8
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 7.6
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 287 bits (705), Expect = 1e-78
Identities = 143/227 (62%), Positives = 160/227 (70%), Gaps = 1/227 (0%)
Frame = -2
Query: 835 MVDXEPXYDICPP*F*H*APNLHQPESSHWTDVSSITASLRFDGALN-GTSPSPDNXXXX 659
MVD E YDIC P VSSITASLRF G+LN + N
Sbjct: 207 MVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPY 266
Query: 658 XXXXXXXXXXXXXXSAEKAYHEQLSVAEITNACFEPANQMVKCGPRHGKYMACCMLYRGD 479
SA KA+HE SV EITN CFEP NQMVKC PR G+YMA C+LYRGD
Sbjct: 267 PRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGD 326
Query: 478 VVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTT 299
V+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV RAVCMLSNTT
Sbjct: 327 VIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTT 386
Query: 298 AIAEAWARLDHKFDLMYAKRASVHWYVGEGMEEGEFSEAREDLAALE 158
+IAEAW+RLDHKFDLMY+KRA VHWYVGEGMEEGEFSEAREDLAALE
Sbjct: 387 SIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE 433
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 285 bits (699), Expect = 5e-78
Identities = 142/227 (62%), Positives = 160/227 (70%), Gaps = 1/227 (0%)
Frame = -2
Query: 835 MVDXEPXYDICPP*F*H*APNLHQPESSHWTDVSSITASLRFDGALN-GTSPSPDNXXXX 659
MVD E YDIC P+ VSSITASLRF+G+LN + N
Sbjct: 203 MVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPY 262
Query: 658 XXXXXXXXXXXXXXSAEKAYHEQLSVAEITNACFEPANQMVKCGPRHGKYMACCMLYRGD 479
SA KA+HE SV EITN CFEP NQMVKC PR G+YMA C+LYRGD
Sbjct: 263 PRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGD 322
Query: 478 VVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTT 299
V+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++AKV RAVCMLSNTT
Sbjct: 323 VIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTT 382
Query: 298 AIAEAWARLDHKFDLMYAKRASVHWYVGEGMEEGEFSEAREDLAALE 158
+IAEAW+RLDHKFDLMY+KRA VHWYVGEGMEEGEFSEAREDLAALE
Sbjct: 383 SIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALE 429
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 105 bits (252), Expect = 8e-24
Identities = 59/191 (30%), Positives = 94/191 (49%), Gaps = 1/191 (0%)
Frame = -2
Query: 739 VSSITASLRFDGALNGTSPS-PDNXXXXXXXXXXXXXXXXXXSAEKAYHEQLSVAEITNA 563
++ +T S RF G LN N + + + +SV E+T
Sbjct: 233 MAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQ 292
Query: 562 CFEPANQMVKCGPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVG 383
F+ N MV PRHG+Y+ L+RG V K+V+ I +++TK + FV+W P
Sbjct: 293 MFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKA 352
Query: 382 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRASVHWYVGEGME 203
+ PP DL + + + N+T+I E + RL +F M+ ++A +HWY GEGM+
Sbjct: 353 VCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMD 404
Query: 202 EGEFSEAREDL 170
E EF+EA ++
Sbjct: 405 EMEFTEAESNM 415
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 54.0 bits (124), Expect = 3e-08
Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 8/214 (3%)
Frame = -2
Query: 778 PNLHQPESSHWTDVSSITASLRFDGALNGTSPSPDNXXXXXXXXXXXXXXXXXXSAEKAY 599
P HQ T +S+ T +LR+ G +N S + ++
Sbjct: 223 PTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVE 282
Query: 598 H----EQLSVAEITNACFEPANQMVKCGP-RHGKYMACCMLYRGDVVPKDVNAAIATIKT 434
+ +V ++ P NQMV P + +++ + +G+ P DV+ ++ I+
Sbjct: 283 EAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRE 342
Query: 433 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL 254
+R F+ W P +V ++ + P + ++ + ML+N T+IA + R ++D
Sbjct: 343 RRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDR 397
Query: 253 MYAKRASVHWYVGEGMEE---GEFSEAREDLAAL 161
+ + A + Y E + E EF +R+ +A L
Sbjct: 398 LRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADL 431
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 37.1 bits (82), Expect = 0.003
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 7/133 (5%)
Frame = -3
Query: 594 NSFPLPRSQTHASSPPTRW*NAVPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNS 415
NS PLP + T ++ ++P S+ L+ T T P + S+P P+ S++
Sbjct: 218 NSSPLPTTSTSCTTS-----TSIPTGGSSSLSTPITP-TVPPTSTSSTSIPIPPTSTSST 271
Query: 414 STGVQPV---SRSVST-TSHPPWCPEATWPRFNVP---SACCPTPPPSLKLGLALTTSST 256
T P+ S S +T TS PP T VP ++ TPPP +TSST
Sbjct: 272 DTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPA------STSST 325
Query: 255 SCTPSVLPCTGTS 217
+ S LP T TS
Sbjct: 326 GTSSSPLPSTSTS 338
Score = 37.1 bits (82), Expect = 0.003
Identities = 41/137 (29%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Frame = -3
Query: 594 NSFPLPRSQTHASSPPTRW*NAVPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNS 415
NS PLP + T ++ ++P ++ V TV + + P P+ S S
Sbjct: 274 NSSPLPTTSTSCTTS-----TSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTS 328
Query: 414 STGVQPVSRSVST-TSHPPWCPEATWPRFNVP---SACCPTPPPSLKLGLALTTS----- 262
S+ + S S +T TS PP T VP ++ TPPP T+S
Sbjct: 329 SSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLS 388
Query: 261 -STSCTPSV-LPCTGTS 217
STSCT S +P TG S
Sbjct: 389 TSTSCTTSTSIPPTGNS 405
Score = 30.3 bits (65), Expect = 0.35
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 16/142 (11%)
Frame = -3
Query: 594 NSFPLPRSQTHASS----PPTRW*NAVPVMASTWLAVCCTVVTSYPRM*TRPSLP---SK 436
+S PLP + T ++ PPT +++ + + T TS P T S S
Sbjct: 104 SSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSN 163
Query: 435 P----SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKL----G 280
P S +ST + P S S ++ P P T P + S P PP S
Sbjct: 164 PLPTTSTSCTTSTSIPPTGGSSSLST--PITP--TVPPTSTSSTSIPIPPTSTSSTDTNS 219
Query: 279 LALTTSSTSCTPSV-LPCTGTS 217
L T+STSCT S +P G+S
Sbjct: 220 SPLPTTSTSCTTSTSIPTGGSS 241
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 32.7 bits (71), Expect = 0.066
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Frame = -3
Query: 474 YPRM*TRPSLP----SKPSVLSN-SSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACC 310
YP P+LP SKP V+ N V P +R + P+ ++P P+ C
Sbjct: 166 YPVSLPSPNLPHQPISKPPVIPNLPKLQVHP-NRLPHPIHNHPYSSPTSYPPPLCPATYC 224
Query: 309 PTPPPSLKLGLALTTSSTSCTPSVLPCTGTSVRVWRRESSP--KPVRTWLP 163
P+ PP L A+ SS S + + T + + P + WLP
Sbjct: 225 PSNPPQLAPATAIAPSSQSSQHKSVNYSVTPSSINNHTAVPLSPTLAVWLP 275
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.12
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
Frame = -3
Query: 480 TSYPRM*TRPSLP-SKPSVLSNSS--TGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACC 310
TS P PS P SKP S ++ V PV + +S+ + P P A P VPS
Sbjct: 983 TSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPK-LSSKAPPVPLPSADAPPIPVPSTAP 1041
Query: 309 PTPPPSLKLGLALTTSSTSCTPSVLPCTGTSVRVWRRESSPKPV 178
P P P+ + ++S P +P + + S PV
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPV 1085
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 31.1 bits (67), Expect = 0.20
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -2
Query: 574 ITNACFEPANQMVKCGPRHGKYMACCMLYRGDVVPKDVNAAI 449
+ ACFEP N CG H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -2
Query: 613 AEKAYHEQLSVAEITNACFEPANQMVKCGPRHGKYM 506
A+ YH E + CF P N+ + CG ++M
Sbjct: 568 AKLRYHLLTEEFEEEHICFRPCNKKLSCGNHFCQHM 603
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.27
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 486 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 352
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 30.7 bits (66), Expect = 0.27
Identities = 22/85 (25%), Positives = 34/85 (40%)
Frame = -3
Query: 441 SKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTS 262
S P+ S + PVS + T + PP A R N A P + + A T S
Sbjct: 1001 SMPAAKSKPAPMANPVSTAQQTQNRPP--APAMQARPNTTQAAAPVTSTTTTIKQATTVS 1058
Query: 261 STSCTPSVLPCTGTSVRVWRRESSP 187
++ PS + +S + S+P
Sbjct: 1059 ASKPAPSTVTSAASSPSNISKPSAP 1083
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.35
Identities = 28/111 (25%), Positives = 45/111 (40%)
Frame = -3
Query: 612 PRRXTMNSFPLPRSQTHASSPPTRW*NAVPVMASTWLAVCCTVVTSYPRM*TRPSLPSKP 433
PR S PLP A PP + P + + S P P+ P P
Sbjct: 343 PRSNAAGSIPLPPQGRSAPPPPPP--RSAPSTGRQPPPLSSSRAVSNP-----PAPP--P 393
Query: 432 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLG 280
++ S+ + P+ + T++ P P + P + P + P+ PPSL +G
Sbjct: 394 AIPGRSAPALPPLGNASRTSTPPVPTPPSLPP--SAPPSLPPSAPPSLPMG 442
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.1 bits (62), Expect = 0.82
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = -3
Query: 432 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTSSTS 253
S+L +S+ P+S + STT+ T ++ TP S+ + T +STS
Sbjct: 280 SLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTS 339
Query: 252 CTP--SVLPCTGTS 217
TP SV T TS
Sbjct: 340 STPLSSVNSTTATS 353
Score = 26.2 bits (55), Expect = 5.8
Identities = 33/127 (25%), Positives = 49/127 (38%)
Frame = -3
Query: 594 NSFPLPRSQTHASSPPTRW*NAVPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNS 415
N+ L S T +S+P + + AS+ T+ T S S + + +
Sbjct: 277 NTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTAT 336
Query: 414 STGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTSSTSCTPSVL 235
ST P+S STT+ T ++ TP S+ A + SST T S
Sbjct: 337 STSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLT-SAN 395
Query: 234 PCTGTSV 214
T TSV
Sbjct: 396 STTSTSV 402
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 29.1 bits (62), Expect = 0.82
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -3
Query: 324 PSACCPTPPPSLKLGLALTTSSTSCTPSVLPCTGTSVRVWRRESSPKPVRTWLPS 160
P+ + P + G+ TS TS T S P S++ S+P P W P+
Sbjct: 134 PATSSFSDPKAFSAGVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPT 188
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -3
Query: 432 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGL-ALTTSST 256
S+L ST V + T P AT R+N + P P P G+ A+ T++T
Sbjct: 1581 SLLGEEST-VSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMSAMNTNTT 1639
Query: 255 SCTP 244
S TP
Sbjct: 1640 STTP 1643
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -3
Query: 432 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGL-ALTTSST 256
S+L ST V + T P AT R+N + P P P G+ A+ T++T
Sbjct: 1581 SLLGEEST-VSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMSAMNTNTT 1639
Query: 255 SCTP 244
S TP
Sbjct: 1640 STTP 1643
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.4
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -3
Query: 441 SKPSVLSNSSTGVQP--VSRSVSTTSHPPWC--PEATWPRFNVPSACCPTPPP 295
S P+ S++GV VS S S PP P A P ++PS P PPP
Sbjct: 141 SAPASQEPSASGVNAPTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPP 193
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 339 PRFNVPSACCPTPPPSLKLGLALTTSSTSCTPSVLP 232
P++ +P+A PT + GL L T+ +P +LP
Sbjct: 126 PQYKIPAAPAPTSKRVVNRGLKLNTNLRQASP-ILP 160
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -3
Query: 450 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 364
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +2
Query: 446 SDGRVHILGYDVTTVQHTASHVLAMTGTAFHHLVGGLEACVCDLGNGK 589
S G +LGY ++ A++V+A + HL+ G D K
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,391,466
Number of Sequences: 5004
Number of extensions: 71674
Number of successful extensions: 274
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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