Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_C04
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    30   0.43 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   0.76 
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.1  
SPBC3B9.18c |vma7||V-type ATPase subunit F |Schizosaccharomyces ...    27   4.0  
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    26   5.4  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
 Frame = -3

Query: 186 REPRRGRRHAADGYRQHPGCRAVGPEGPQG------PRHPLGD-VQCRRHRPGEERSRHQ 28
           R P+R R +  +  R+  G   +G E P+G      PR    D    RRHR   ERS  +
Sbjct: 13  RIPKRHRDYRDEEPRRERGSGGIGREDPRGHYGSERPRRRRRDESDFRRHRESRERSYRE 72

Query: 27  QPEEKKKKK 1
               +++++
Sbjct: 73  DERPRRERR 81


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
 Frame = -3

Query: 249 PEHGVGKAASAEENGDRAADWRE-PRRGRRHAADGYRQHPGCRAVGPEGPQGPRHPLGDV 73
           PEH  G        G +  +  + P+    H     ++H        +GP+   H  G  
Sbjct: 353 PEHHRGPEDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHH-------KGPKDKEHHKGPK 405

Query: 72  QCRRHRPGEERSRHQQPEEKKKKK 1
               H+  +++  HQ P+EK  ++
Sbjct: 406 DKEHHKGPKDKEHHQGPKEKHNER 429


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 369  ALVNSKIIIAQVNVNMPRTFGDAIIHV 289
            +++N    IAQV +++PRT GD I+ V
Sbjct: 1228 SIINKIRKIAQVKIDVPRTPGDEIVVV 1254


>SPBC3B9.18c |vma7||V-type ATPase subunit F |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 120

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = +3

Query: 6   FFFFLQVVGDGSSLHQVDDADTEHLRVDAEVLVVLQGRQHGIRDAADTHLQRGAVLDEVL 185
           FF   Q   D       DD  T+  R D  ++++ Q     IRD  + H+Q    + E+ 
Sbjct: 40  FFIITQKTTDEQIAEAFDDYTTK--RKDIAIVLINQFAAERIRDRIENHVQAFPAVLEIP 97

Query: 186 ANQPP 200
           +   P
Sbjct: 98  SKDDP 102


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 515 ERPSATDLRTFAAINNDTDLNMSLHSGVTYAASFSVCI 628
           ERPSA   R    I  + D+     SG    A+FS+ +
Sbjct: 40  ERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,105,174
Number of Sequences: 5004
Number of extensions: 61590
Number of successful extensions: 199
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)