Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_C04
(788 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006011-2|AAX82033.1| 1336|Homo sapiens unknown protein. 35 0.38
AB044749-1|BAB32435.1| 1336|Homo sapiens WDC146 protein. 35 0.38
U77494-1|AAB67052.1| 1037|Homo sapiens RANBP8 protein. 34 0.67
AK123661-1|BAC85671.1| 329|Homo sapiens protein ( Homo sapiens ... 34 0.67
AB209602-1|BAD92839.1| 485|Homo sapiens importin 8 variant prot... 34 0.67
AF072825-1|AAC25598.1| 526|Homo sapiens Raf responsive zinc fin... 33 0.89
Z97652-2|CAM26431.1| 1269|Homo sapiens Crm, cramped-like (Drosop... 33 1.6
BC018935-1|AAH18935.2| 689|Homo sapiens bin3, bicoid-interactin... 33 1.6
BC000556-1|AAH00556.2| 689|Homo sapiens bin3, bicoid-interactin... 33 1.6
AL031708-1|CAM26357.1| 1269|Homo sapiens Crm, cramped-like (Dros... 33 1.6
AL031009-1|CAM26477.1| 1269|Homo sapiens Crm, cramped-like (Dros... 33 1.6
AE006639-2|AAK61288.1| 1587|Homo sapiens unknown protein. 33 1.6
U26914-1|AAB19094.1| 755|Homo sapiens ras-responsive element bi... 32 2.1
D87437-1|BAA13381.2| 1122|Homo sapiens KIAA0250 protein. 32 2.7
AL031730-1|CAI20091.1| 580|Homo sapiens novel protein protein. 32 2.7
AL031727-1|CAI19015.1| 580|Homo sapiens novel protein protein. 32 2.7
AJ890452-1|CAI67596.1| 130|Homo sapiens collagen, type XXVIII p... 32 2.7
AJ890451-1|CAI67595.1| 1125|Homo sapiens collagen, type XXVIII p... 32 2.7
Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen... 31 3.6
X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1 p... 31 3.6
X07884-1|CAA30731.1| 472|Homo sapiens protein ( Human mRNA for ... 31 3.6
U15177-1|AAA75509.1| 404|Homo sapiens unknown protein. 31 3.6
M36546-1|AAA60150.1| 472|Homo sapiens COL1A1 protein. 31 3.6
M20789-1|AAB59373.1| 589|Homo sapiens alpha-1 type I collagen p... 31 3.6
L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein. 31 3.6
L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen... 31 3.6
BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha... 31 3.6
AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen... 31 3.6
AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain ... 31 3.6
AK074098-1|BAB84924.1| 432|Homo sapiens FLJ00169 protein protein. 30 8.3
AB065581-1|BAC05811.1| 199|Homo sapiens seven transmembrane hel... 30 8.3
>AC006011-2|AAX82033.1| 1336|Homo sapiens unknown protein.
Length = 1336
Score = 34.7 bits (76), Expect = 0.38
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -3
Query: 255 PLPEHGVGKAASAEENGDRAADWREPRRGRRHAADGYRQHPGCRA-VGPEGPQGPRHPLG 79
PL + G G G + PR H G ++HPG +GP+GP GP+ G
Sbjct: 641 PLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSG 700
>AB044749-1|BAB32435.1| 1336|Homo sapiens WDC146 protein.
Length = 1336
Score = 34.7 bits (76), Expect = 0.38
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -3
Query: 255 PLPEHGVGKAASAEENGDRAADWREPRRGRRHAADGYRQHPGCRA-VGPEGPQGPRHPLG 79
PL + G G G + PR H G ++HPG +GP+GP GP+ G
Sbjct: 641 PLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSG 700
>U77494-1|AAB67052.1| 1037|Homo sapiens RANBP8 protein.
Length = 1037
Score = 33.9 bits (74), Expect = 0.67
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -1
Query: 176 VEDGATLQMGIGSIPDAVLSALKDHKDLGIHSEMFSVGVIDLV 48
VED + MGI D +L+ ++DHK++ E + +IDLV
Sbjct: 601 VEDKTVMAMGILHTIDTILTVVEDHKEITQQLENICLRIIDLV 643
>AK123661-1|BAC85671.1| 329|Homo sapiens protein ( Homo sapiens
cDNA FLJ41667 fis, clone FEBRA2028366. ).
Length = 329
Score = 33.9 bits (74), Expect = 0.67
Identities = 22/54 (40%), Positives = 27/54 (50%)
Frame = -3
Query: 291 VSHIDYAVEDNTPLPEHGVGKAASAEENGDRAADWREPRRGRRHAADGYRQHPG 130
V H D+ PL GV + SAEE+ + A WR P R R A G Q+PG
Sbjct: 146 VPHPDFLASGERPLRRVGVARG-SAEESWGQRAWWRGPAR-RVPGARGRPQNPG 197
>AB209602-1|BAD92839.1| 485|Homo sapiens importin 8 variant
protein.
Length = 485
Score = 33.9 bits (74), Expect = 0.67
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -1
Query: 176 VEDGATLQMGIGSIPDAVLSALKDHKDLGIHSEMFSVGVIDLV 48
VED + MGI D +L+ ++DHK++ E + +IDLV
Sbjct: 77 VEDKTVMAMGILHTIDTILTVVEDHKEITQQLENICLRIIDLV 119
>AF072825-1|AAC25598.1| 526|Homo sapiens Raf responsive zinc finger
protein protein.
Length = 526
Score = 33.5 bits (73), Expect = 0.89
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Frame = -3
Query: 267 EDNTPLPEHGVGKAASAEENGDRAADWREPRRGRRHAADGYRQHPGCRAVGPEGPQGPRH 88
E + P EHG ++ + G + EP G RH A G + G R P G
Sbjct: 171 ESHEPEEEHGTEESTGDADGGRGRVEQPEPGPGLRHQAHGLQAGGGRRRGRPGGAASQEQ 230
Query: 87 PLGDVQC-RRHRPGEERSRHQQPEEKKKKK 1
L C + + SRH++ +++ K
Sbjct: 231 KLSSDTCGKSFKFLGTLSRHRKAHGRQEPK 260
>Z97652-2|CAM26431.1| 1269|Homo sapiens Crm, cramped-like
(Drosophila) protein.
Length = 1269
Score = 32.7 bits (71), Expect = 1.6
Identities = 29/87 (33%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Frame = -3
Query: 264 DNTPLPEHGVGKAASAEENGDRAADWREPRRGRRHAADGYRQHPGCRAVGPEGPQGPRHP 85
D L G G A +AEE+ D + PR G ADG PG PQ P P
Sbjct: 24 DEESLEGEGAGGADAAEESSGTKRDEKTPRAG----ADGPPAPPG-------APQAPSPP 72
Query: 84 LGDVQCRRH------RPGEERSRHQQP 22
G Q + H RP +R R P
Sbjct: 73 QGSPQDQHHFLRSSVRPQSKRPRKDPP 99
>BC018935-1|AAH18935.2| 689|Homo sapiens bin3, bicoid-interacting
3, homolog (Drosophila) protein.
Length = 689
Score = 32.7 bits (71), Expect = 1.6
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -3
Query: 231 KAASAEENG--DRAADWREPRRGRRHAADGYRQHPGCRAVGPEGPQGPRHPLGDVQCRRH 58
+AAS E G +R P G AA G R+ PG A GPQ +H G Q + H
Sbjct: 37 EAASGELRGGTERGPGRCAPSAGSPAAAVG-RESPGAAATSSSGPQAQQHRGGGPQAQSH 95
Query: 57 RPGEER 40
GE R
Sbjct: 96 --GEAR 99
>BC000556-1|AAH00556.2| 689|Homo sapiens bin3, bicoid-interacting
3, homolog (Drosophila) protein.
Length = 689
Score = 32.7 bits (71), Expect = 1.6
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -3
Query: 231 KAASAEENG--DRAADWREPRRGRRHAADGYRQHPGCRAVGPEGPQGPRHPLGDVQCRRH 58
+AAS E G +R P G AA G R+ PG A GPQ +H G Q + H
Sbjct: 37 EAASGELRGGTERGPGRCAPSAGSPAAAVG-RESPGAAATSSSGPQAQQHRGGGPQAQSH 95
Query: 57 RPGEER 40
GE R
Sbjct: 96 --GEAR 99
>AL031708-1|CAM26357.1| 1269|Homo sapiens Crm, cramped-like
(Drosophila) protein.
Length = 1269
Score = 32.7 bits (71), Expect = 1.6
Identities = 29/87 (33%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Frame = -3
Query: 264 DNTPLPEHGVGKAASAEENGDRAADWREPRRGRRHAADGYRQHPGCRAVGPEGPQGPRHP 85
D L G G A +AEE+ D + PR G ADG PG PQ P P
Sbjct: 24 DEESLEGEGAGGADAAEESSGTKRDEKTPRAG----ADGPPAPPG-------APQAPSPP 72
Query: 84 LGDVQCRRH------RPGEERSRHQQP 22
G Q + H RP +R R P
Sbjct: 73 QGSPQDQHHFLRSSVRPQSKRPRKDPP 99
>AL031009-1|CAM26477.1| 1269|Homo sapiens Crm, cramped-like
(Drosophila) protein.
Length = 1269
Score = 32.7 bits (71), Expect = 1.6
Identities = 29/87 (33%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Frame = -3
Query: 264 DNTPLPEHGVGKAASAEENGDRAADWREPRRGRRHAADGYRQHPGCRAVGPEGPQGPRHP 85
D L G G A +AEE+ D + PR G ADG PG PQ P P
Sbjct: 24 DEESLEGEGAGGADAAEESSGTKRDEKTPRAG----ADGPPAPPG-------APQAPSPP 72
Query: 84 LGDVQCRRH------RPGEERSRHQQP 22
G Q + H RP +R R P
Sbjct: 73 QGSPQDQHHFLRSSVRPQSKRPRKDPP 99
>AE006639-2|AAK61288.1| 1587|Homo sapiens unknown protein.
Length = 1587
Score = 32.7 bits (71), Expect = 1.6
Identities = 29/87 (33%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Frame = -3
Query: 264 DNTPLPEHGVGKAASAEENGDRAADWREPRRGRRHAADGYRQHPGCRAVGPEGPQGPRHP 85
D L G G A +AEE+ D + PR G ADG PG PQ P P
Sbjct: 61 DEESLEGEGAGGADAAEESSGTKRDEKTPRAG----ADGPPAPPG-------APQAPSPP 109
Query: 84 LGDVQCRRH------RPGEERSRHQQP 22
G Q + H RP +R R P
Sbjct: 110 QGSPQDQHHFLRSSVRPQSKRPRKDPP 136
>U26914-1|AAB19094.1| 755|Homo sapiens ras-responsive element
binding protein protein.
Length = 755
Score = 32.3 bits (70), Expect = 2.1
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Frame = -3
Query: 267 EDNTPLPEHGVGKAASAEENGDRAADWREPRRGRRHAADGYRQHPGCRAVGPEGPQGPRH 88
E + P EHG ++ + G + EP G RH A G + G R P G
Sbjct: 400 ESHEPEEEHGTEESTGDADGGRGRVEQPEPGPGLRHQAHGLQAGGGRRRGRPGGAASQEQ 459
Query: 87 PLGDVQC-RRHRPGEERSRHQQPEEKKKKK 1
L C + + SRH++ +++ K
Sbjct: 460 KLACDTCGKSFKFLGTLSRHRKAHGRQEPK 489
>D87437-1|BAA13381.2| 1122|Homo sapiens KIAA0250 protein.
Length = 1122
Score = 31.9 bits (69), Expect = 2.7
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -3
Query: 144 RQHPGCRAVGPEGPQGPRHPLGDVQCRRHRPGEERSRHQQPEEKKK 7
RQHP CR P + PR G + RR R + +++ + E K
Sbjct: 2 RQHPRCRGAAPRSLRDPRRLRGKTRRRRRRMSLQSAQYLRQAEVLK 47
>AL031730-1|CAI20091.1| 580|Homo sapiens novel protein protein.
Length = 580
Score = 31.9 bits (69), Expect = 2.7
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Frame = -3
Query: 285 HIDYAVEDNTPLPEHGVGKAASAEENGDRAADWREPRRGRRHAADGYRQ--HPGCRAVGP 112
H+DYA + + L G+ +E G A P R AA GC + GP
Sbjct: 504 HLDYAKQMDAILKAVGIRTKPGWDEKGLLLAPGCLPSEEPRQAAAAASSALESGCPSGGP 563
Query: 111 EGPQGPRHP 85
EG GP P
Sbjct: 564 EGSLGPEAP 572
>AL031727-1|CAI19015.1| 580|Homo sapiens novel protein protein.
Length = 580
Score = 31.9 bits (69), Expect = 2.7
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Frame = -3
Query: 285 HIDYAVEDNTPLPEHGVGKAASAEENGDRAADWREPRRGRRHAADGYRQ--HPGCRAVGP 112
H+DYA + + L G+ +E G A P R AA GC + GP
Sbjct: 504 HLDYAKQMDAILKAVGIRTKPGWDEKGLLLAPGCLPSEEPRQAAAAASSALESGCPSGGP 563
Query: 111 EGPQGPRHP 85
EG GP P
Sbjct: 564 EGSLGPEAP 572
>AJ890452-1|CAI67596.1| 130|Homo sapiens collagen, type XXVIII
protein.
Length = 130
Score = 31.9 bits (69), Expect = 2.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 150 GYRQHPGCRAVGPEGPQGPRHPLG 79
G++ PG GP+G QGPR P+G
Sbjct: 24 GFKGEPGLSIRGPKGVQGPRGPVG 47
>AJ890451-1|CAI67595.1| 1125|Homo sapiens collagen, type XXVIII
protein.
Length = 1125
Score = 31.9 bits (69), Expect = 2.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 150 GYRQHPGCRAVGPEGPQGPRHPLG 79
G++ PG GP+G QGPR P+G
Sbjct: 607 GFKGEPGLSIRGPKGVQGPRGPVG 630
>Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen
protein.
Length = 1464
Score = 31.5 bits (68), Expect = 3.6
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 234 GKAASAEENGDRAADWREPRRGRRHAADGYRQHPGCR-AVGPEGPQGPRHPLG 79
G A +A G+ AD + +G + A G PG A GP GPQGP P G
Sbjct: 377 GPAGAAGPAGNPGADGQPGAKGA-NGAPGIAGAPGFPGARGPSGPQGPGGPPG 428
>X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1
protein.
Length = 1069
Score = 31.5 bits (68), Expect = 3.6
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 234 GKAASAEENGDRAADWREPRRGRRHAADGYRQHPGCR-AVGPEGPQGPRHPLG 79
G A +A G+ AD + +G + A G PG A GP GPQGP P G
Sbjct: 377 GPAGAAGPAGNPGADGQPGAKGA-NGAPGIAGAPGFPGARGPSGPQGPGGPPG 428
>X07884-1|CAA30731.1| 472|Homo sapiens protein ( Human mRNA for
alpha-1(I) chain of procollagen type I. ).
Length = 472
Score = 31.5 bits (68), Expect = 3.6
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 234 GKAASAEENGDRAADWREPRRGRRHAADGYRQHPGCR-AVGPEGPQGPRHPLG 79
G A +A G+ AD + +G + A G PG A GP GPQGP P G
Sbjct: 377 GPAGAAGPAGNPGADGQPGAKGA-NGAPGIAGAPGFPGARGPSGPQGPGGPPG 428
>U15177-1|AAA75509.1| 404|Homo sapiens unknown protein.
Length = 404
Score = 31.5 bits (68), Expect = 3.6
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Frame = -3
Query: 180 PRRGRRHAADGYRQHPGCRAV-GP------EGPQGPRHPLGDVQ-CRRHRPGEERSRHQQ 25
PRR R + GY PG AV GP +GPQ PR P D Q RP
Sbjct: 48 PRRARP-SVSGYAARPGALAVSGPAGQPPGQGPQRPRRPAKDAQPAPPPRPAGATRTGAP 106
Query: 24 PEEKKKKK 1
P E ++ K
Sbjct: 107 PAEGRRHK 114
>M36546-1|AAA60150.1| 472|Homo sapiens COL1A1 protein.
Length = 472
Score = 31.5 bits (68), Expect = 3.6
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 234 GKAASAEENGDRAADWREPRRGRRHAADGYRQHPGCR-AVGPEGPQGPRHPLG 79
G A +A G+ AD + +G + A G PG A GP GPQGP P G
Sbjct: 377 GPAGAAGPAGNPGADGQPGAKGA-NGAPGIAGAPGFPGARGPSGPQGPGGPPG 428
>M20789-1|AAB59373.1| 589|Homo sapiens alpha-1 type I collagen
protein.
Length = 589
Score = 31.5 bits (68), Expect = 3.6
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 234 GKAASAEENGDRAADWREPRRGRRHAADGYRQHPGCR-AVGPEGPQGPRHPLG 79
G A +A G+ AD + +G + A G PG A GP GPQGP P G
Sbjct: 377 GPAGAAGPAGNPGADGQPGAKGA-NGAPGIAGAPGFPGARGPSGPQGPGGPPG 428
>L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein.
Length = 2912
Score = 31.5 bits (68), Expect = 3.6
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = -3
Query: 255 PLPEHGVGKAASAEENGDRAADWREPRRGRRHAADGYRQHPGCRAVGPEGPQGPRHPLGD 76
P P G+A A E GD D ++ G + G++ PG G GP GP GD
Sbjct: 2303 PGPRGEKGEAGRAGEPGDPGEDGQKGAPGPK----GFKGDPGVGVPGSPGPPGPPGVKGD 2358
Query: 75 V 73
+
Sbjct: 2359 L 2359
>L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen
protein.
Length = 2944
Score = 31.5 bits (68), Expect = 3.6
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = -3
Query: 255 PLPEHGVGKAASAEENGDRAADWREPRRGRRHAADGYRQHPGCRAVGPEGPQGPRHPLGD 76
P P G+A A E GD D ++ G + G++ PG G GP GP GD
Sbjct: 2335 PGPRGEKGEAGRAGEPGDPGEDGQKGAPGPK----GFKGDPGVGVPGSPGPPGPPGVKGD 2390
Query: 75 V 73
+
Sbjct: 2391 L 2391
>BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha 1
protein.
Length = 1464
Score = 31.5 bits (68), Expect = 3.6
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 234 GKAASAEENGDRAADWREPRRGRRHAADGYRQHPGCR-AVGPEGPQGPRHPLG 79
G A +A G+ AD + +G + A G PG A GP GPQGP P G
Sbjct: 377 GPAGAAGPAGNPGADGQPGAKGA-NGAPGIAGAPGFPGARGPSGPQGPGGPPG 428
>AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen
protein.
Length = 1461
Score = 31.5 bits (68), Expect = 3.6
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 234 GKAASAEENGDRAADWREPRRGRRHAADGYRQHPGCR-AVGPEGPQGPRHPLG 79
G A +A G+ AD + +G + A G PG A GP GPQGP P G
Sbjct: 374 GPAGAAGPAGNPGADGQPGAKGA-NGAPGIAGAPGFPGARGPSGPQGPGGPPG 425
>AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain
precursor variant protein.
Length = 1467
Score = 31.5 bits (68), Expect = 3.6
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 234 GKAASAEENGDRAADWREPRRGRRHAADGYRQHPGCR-AVGPEGPQGPRHPLG 79
G A +A G+ AD + +G + A G PG A GP GPQGP P G
Sbjct: 380 GPAGAAGPAGNPGADGQPGAKGA-NGAPGIAGAPGFPGARGPSGPQGPGGPPG 431
>AK074098-1|BAB84924.1| 432|Homo sapiens FLJ00169 protein protein.
Length = 432
Score = 30.3 bits (65), Expect = 8.3
Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = -3
Query: 186 REPRR-GRRHAADGYRQHPGCRAVGPEGPQGP--RHPLGDVQCRRHRPG 49
+ PRR RR AA GC VGP G RH GD RR +PG
Sbjct: 5 KRPRRHSRRTAASSQGFGAGCAGVGPPGTGRALNRHRCGD-WSRRRKPG 52
>AB065581-1|BAC05811.1| 199|Homo sapiens seven transmembrane helix
receptor protein.
Length = 199
Score = 30.3 bits (65), Expect = 8.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 239 AWGRRPAPRKTEIGRLIGENLVEDGATLQMGIG 141
+WGR A R E+ R+ G + E G +G+G
Sbjct: 39 SWGRGAAERTAELVRMNGRPVAEGGGPASLGVG 71
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,841,898
Number of Sequences: 237096
Number of extensions: 2673669
Number of successful extensions: 17872
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 14380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17537
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -