Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_B24
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    50   5e-07
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   1.0  
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    27   4.2  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    26   5.5  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    26   5.5  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    26   7.3  

>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 49.6 bits (113), Expect = 5e-07
 Identities = 30/105 (28%), Positives = 51/105 (48%)
 Frame = -1

Query: 516 APRADEAPLPPRPDRVVVKKYNPKEAKPRAAAGDEWLVLPITGEKIPASKVAEHVRIGLL 337
           +P A  +P+     +  V+K  PK  +P+        + P +GE +PA+++ EH+R+ LL
Sbjct: 352 SPAAQASPVLSTTTQPKVQKPVPKAFQPKVPME----ISPFSGELVPATELEEHMRLKLL 407

Query: 336 DPRWLXXXXXXXXXXXXXXXALAPGAAIEASLKQLAERRTDIFGV 202
           DPRW                       + A++K+L  +RTD+F V
Sbjct: 408 DPRWQEQRKVEESRKSTLN---LENVNVAANMKRLVSQRTDLFDV 449


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
 Frame = -1

Query: 516  APRADEAPLPPRPDRVVVKKY------NPKEAKPRAAAGDEWLVLPITGEKIPASKV 364
            AP A+ AP P  P + VV+K        PK   P+    D W   P+T   + AS V
Sbjct: 898  APVAEPAP-PAAPAKEVVEKAPSPPATRPKSTTPQKFDDDAWANKPVTEPPVRASSV 953


>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 559 HVLHAGYRPADGTEFYPPFPQVPHQTPIRF 648
           H+ HAG  P D ++ Y PF    H  P RF
Sbjct: 138 HMAHAGDSPIDYSK-YAPFNSPSHYHPKRF 166


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 417 DEWLVLPITGEKIPASKVAEHVRI 346
           D W  +PI GE +  +K+ +H+++
Sbjct: 265 DSWTSVPIQGELVELNKLLQHLQL 288


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 568 HAGYRPADGTEFYPPFPQVPHQTPIRFGIQFASQYHRRHSGSV 696
           H  +   DGT      P   HQ+P    +  + ++HRRH   +
Sbjct: 125 HMAFSKNDGTNL--SLPPSRHQSPPPSSVLASQRHHRRHDSEL 165


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -1

Query: 492 LPPRPDRVVVKKYNPKEAKPR 430
           +PP   R+VVK ++P++++ R
Sbjct: 1   MPPEAKRIVVKGFDPRKSRQR 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,020,399
Number of Sequences: 5004
Number of extensions: 29726
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)