Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_B24
(810 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein. 92 5e-19
AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp (sp... 92 5e-19
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z75544-2|CAC42316.1| 480|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z75544-1|CAA99881.1| 476|Caenorhabditis elegans Hypothetical pr... 29 3.9
L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with... 29 5.2
L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with... 29 5.2
U97010-2|AAB52319.1| 198|Caenorhabditis elegans Hypothetical pr... 28 9.1
U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical pr... 28 9.1
>U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein.
Length = 655
Score = 91.9 bits (218), Expect = 5e-19
Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 6/163 (3%)
Frame = -1
Query: 519 DAPRADEAPLPPRPDR-VVVKKYNPKE---AKPRAAAGDEWLVLPITGEKIPASKVAEHV 352
+AP A APLPP + V+V+ Y+PK KP+A + W++ P+TGE+IP+ K+AEHV
Sbjct: 311 EAP-AFTAPLPPTKQKDVIVRDYDPKRNVTQKPKAV--ENWIISPLTGERIPSDKLAEHV 367
Query: 351 RIGLLDPRWLXXXXXXXXXXXXXXXALAPGAAIEASLKQLAERRTDIFGVXXXXXXXXXX 172
R +D ++ LA GA I +L AERRTDIFGV
Sbjct: 368 RYNTVDSQYKEDRDRHIGERSTEEPVLALGADISRNLGNFAERRTDIFGVGGEQTMIGKK 427
Query: 171 XXXXXXKR--DERVTWDGHTSSVEAATRAARAHITLEDQIQQI 49
+ ++ WDG + + TRA + +TL+ QI +I
Sbjct: 428 LGEEDNSQQGQNKLIWDGTEETRDMITRAVQNKVTLDQQINEI 470
>AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 21 protein.
Length = 655
Score = 91.9 bits (218), Expect = 5e-19
Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 6/163 (3%)
Frame = -1
Query: 519 DAPRADEAPLPPRPDR-VVVKKYNPKE---AKPRAAAGDEWLVLPITGEKIPASKVAEHV 352
+AP A APLPP + V+V+ Y+PK KP+A + W++ P+TGE+IP+ K+AEHV
Sbjct: 311 EAP-AFTAPLPPTKQKDVIVRDYDPKRNVTQKPKAV--ENWIISPLTGERIPSDKLAEHV 367
Query: 351 RIGLLDPRWLXXXXXXXXXXXXXXXALAPGAAIEASLKQLAERRTDIFGVXXXXXXXXXX 172
R +D ++ LA GA I +L AERRTDIFGV
Sbjct: 368 RYNTVDSQYKEDRDRHIGERSTEEPVLALGADISRNLGNFAERRTDIFGVGGEQTMIGKK 427
Query: 171 XXXXXXKR--DERVTWDGHTSSVEAATRAARAHITLEDQIQQI 49
+ ++ WDG + + TRA + +TL+ QI +I
Sbjct: 428 LGEEDNSQQGQNKLIWDGTEETRDMITRAVQNKVTLDQQINEI 470
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
F35A5.1 protein.
Length = 1274
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -1
Query: 522 QDAPRADEAPLPPRPDRVVVKKYNPK-EAKPRAAAGDEWLVLPITGEKIPASKVAEHVR 349
+DAP+ P P P + V +K K AKPR + + + +P ++ P + V V+
Sbjct: 926 KDAPKVAAKPRDPSPKKAVPEKEPAKVAAKPRDLSPKKAIPIPANTQEAPPTPVKNPVK 984
>Z75544-2|CAC42316.1| 480|Caenorhabditis elegans Hypothetical
protein K02A11.1b protein.
Length = 480
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 754 DXSXXSRARVFAQKRGEDIIRTQNDDD 674
D S + AR+ AQK G DI+RT + +D
Sbjct: 357 DRSGLTPARIEAQKEGADILRTWSKED 383
>Z75544-1|CAA99881.1| 476|Caenorhabditis elegans Hypothetical
protein K02A11.1a protein.
Length = 476
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 754 DXSXXSRARVFAQKRGEDIIRTQNDDD 674
D S + AR+ AQK G DI+RT + +D
Sbjct: 357 DRSGLTPARIEAQKEGADILRTWSKED 383
>L23651-7|AAM22042.1| 926|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
b protein.
Length = 926
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 580 DNPRARHGRGKLDFGVR 530
D+ +ARHG+G +DFG R
Sbjct: 323 DSAKARHGKGNIDFGRR 339
>L23651-6|AAK84496.3| 960|Caenorhabditis elegans Associated with
ran (nuclear import/export) function protein 2, isoform
a protein.
Length = 960
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 580 DNPRARHGRGKLDFGVR 530
D+ +ARHG+G +DFG R
Sbjct: 360 DSAKARHGKGNIDFGRR 376
>U97010-2|AAB52319.1| 198|Caenorhabditis elegans Hypothetical
protein W08A12.3 protein.
Length = 198
Score = 27.9 bits (59), Expect = 9.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 513 PRADEAPLPPRPDRVVVKK 457
PR D PLPP P+ +V+ +
Sbjct: 92 PRVDSTPLPPLPEPIVIPR 110
>U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical
protein ZK180.5c protein.
Length = 399
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 501 EAPLPPRPDRVVVKKYNPKEAKPRAAAGDEWLVLPITGEKIP 376
E P P P+ VV++ + +E P AA V P+T E P
Sbjct: 304 EEPAPAVPEATVVEESHFEEPAPAPAATSAPFVEPVTEESKP 345
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,540,833
Number of Sequences: 27780
Number of extensions: 176013
Number of successful extensions: 585
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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