Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_B19
(781 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 202 4e-53
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po... 28 1.3
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 4.0
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 27 4.0
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 26 5.3
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 25 9.2
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 9.2
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 25 9.2
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 202 bits (493), Expect = 4e-53
Identities = 83/135 (61%), Positives = 116/135 (85%)
Frame = -3
Query: 656 IKPLEGFXIVHQRIFIKDSAVNAVCYGAKVLLPGILRYEDGIEVDQEIVIVTTKGEAVAL 477
I+PLE + ++RI +KDSAVNA+CYGAK+++PG+LRYE GIEV++EIV++TTKGEA+A+
Sbjct: 261 IRPLESLLVGYKRIVVKDSAVNAICYGAKLMIPGLLRYEAGIEVNEEIVLITTKGEAIAV 320
Query: 476 AVALMTTSTMASCDHGVAAKLKRVIMERDTYPRKWGLGPKASQKKILIQQGKLDKYGKPN 297
+A M+T +++CDHGV AK+KR IMERD YPR+WGLGP++ +KK L ++GKLDKYG+PN
Sbjct: 321 GIAQMSTVELSTCDHGVVAKVKRCIMERDVYPRRWGLGPQSMKKKTLKKEGKLDKYGRPN 380
Query: 296 ENTPKEWLNSYVNYN 252
ENTP +W SY++Y+
Sbjct: 381 ENTPADWSKSYIDYS 395
Score = 29.9 bits (64), Expect = 0.43
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 714 LDAQWXYETXKDEXYFXRV 658
LDAQW Y+ +DE Y RV
Sbjct: 242 LDAQWIYDNTRDESYLRRV 260
>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = -3
Query: 335 IQQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEGSRK 201
I QG+LD + KP ++PK+ +++ + K++ ++ G E ++
Sbjct: 336 IPQGRLDSFFKPVPSSPKKPVDTKSKGSAKRKRDSNKGGESKKKR 380
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +1
Query: 391 SRSIMTRLSFAATP*SH-EAIVDVVIRATANATASPLVVTITISWSTSMPS--SYLKIPG 561
S +T +S +T ++ + VD+ TA++T T+S+ST +P+ S L P
Sbjct: 213 SSETLTSVSITSTESAYTSSSVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTLSSPA 272
Query: 562 NS 567
+S
Sbjct: 273 SS 274
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 287 PKEWLNSYVNYNVKKEPENGDGVEEGSRKRTASTANAEDPDV 162
PK + N+ N+KK +GD + R A+ A+A D +V
Sbjct: 275 PKAFFNTDDEDNMKKSSSHGDSEVVEASDRYANQADAADAEV 316
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 5.3
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Frame = -3
Query: 320 LDKYGKP--NENTPKEWLNSYVNYNV-------KKEPENGDGVEEGSRKRTASTANAEDP 168
+D+YG+P + KE Y N E + + V S K T S ++
Sbjct: 65 VDRYGRPLNQDKATKEIDRLYELENEGSSSSSESSEITDNEEVASASSKSTKSEELTDEE 124
Query: 167 DVSIEVXXXXXXXXXKRDSEAPAEADATMDTSESPETAE 51
EV SE+ E+DA +T PE +E
Sbjct: 125 SEDEEVYDPARGEGIISTSESSDESDAESETEAQPEISE 163
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -3
Query: 272 NSYVNYNVKKEPENGDGVEEGSRKRTASTANAEDPDV 162
N YV+ N E +GD + E R R + ++ D+
Sbjct: 3 NEYVDMNSSSEDSDGDSILEEGRLRPSFRGQQKERDM 39
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/65 (21%), Positives = 28/65 (43%)
Frame = -3
Query: 236 ENGDGVEEGSRKRTASTANAEDPDVSIEVXXXXXXXXXKRDSEAPAEADATMDTSESPET 57
E + VE+ K+ S+ ++ D + S + DSE+ + ++ P +
Sbjct: 186 EEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPAS 245
Query: 56 AEQPA 42
E+PA
Sbjct: 246 EERPA 250
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 398 ERDTYPRKWGLGPKAS--QKKILIQQGKLDKYGKPNENTPKEWLNSYV 261
+R + + LG K S +ILI+Q + + E T +W N+YV
Sbjct: 540 DRPRHKKNPELGNKKSIFANEILIEQADAQSFKQDEEVTLMDWGNAYV 587
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,096
Number of Sequences: 5004
Number of extensions: 52205
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -