Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_T7_B05
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    84   2e-17
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    29   0.57 
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    29   0.75 
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    29   0.75 
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    29   0.75 
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    27   2.3  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    27   4.0  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.3  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    25   9.3  

>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 44/112 (39%), Positives = 58/112 (51%)
 Frame = -2

Query: 768 QYRDGTTDIIRTRHMSGNXTAEQRDAFTRVLKGQIMIXSALFPKGVKGNVLDSFARHALW 589
           QY+DGTTD+ RT H  G  +  +R   T  LKG I + + +FPKG  G ++D  AR  LW
Sbjct: 401 QYKDGTTDVTRTWHF-GEPSEFERQTATLALKGHIALANIVFPKGTTGYMIDVLARQYLW 459

Query: 588 EXXXXXXXXXXXXXXXXLNVHEGPSGVSWRPYPDDPGLNVGQILSNEPGFYK 433
           +                LNVHE P G+  R   +   L  G + SNEPGFY+
Sbjct: 460 KYGLDYLHGTGHGVGSFLNVHELPVGIGSREVFNSAPLQAGMVTSNEPGFYE 511



 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 27/74 (36%), Positives = 38/74 (51%)
 Frame = -3

Query: 350 NLRGDYDGRGVLGFSTLTLVPNQRECIDAEILTDFEISYVNAYHRRVLDTLSPILKERGL 171
           N    + GR  LG   LTL P+ ++ ID  +L+  E+ Y+N YH  V  TLSP+L     
Sbjct: 529 NTENRFAGRTYLGLKDLTLAPHCQKLIDPSLLSPEEVKYLNEYHSEVYTTLSPMLS---- 584

Query: 170 LKDLEWLEGQCIPI 129
           +   +WL     PI
Sbjct: 585 VSAKKWLSKHTSPI 598


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
 Frame = +1

Query: 358 LG*SLPLSTATISIRSSWRIPYSP--NFVEARFVAQYLSNVQSRIVGVRTPRDTGRTLVH 531
           LG  +P S     + S   +P  P  N  ++  V   LS   S I G   P  TG+T+  
Sbjct: 368 LGHDIPPSFLKPKLPSDLSVPNLPKLNASQSEAVRAVLSKPLSLIQG---PPGTGKTVTS 424

Query: 532 VEVVTHAVTRPVTVVQAHLPQGVTREAVQNVALNAFRE 645
             VV H  T      ++H P  V   A  NVA++   E
Sbjct: 425 ASVVYHLATMQSRKRKSHSPVLVC--APSNVAVDQLAE 460


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 19/89 (21%), Positives = 43/89 (48%)
 Frame = -3

Query: 401 LIEIVAVDKGSDHPKAKNLRGDYDGRGVLGFSTLTLVPNQRECIDAEILTDFEISYVNAY 222
           ++E + +DKG D    K ++G Y     L  + L + P+  E  + E+ T   +  ++A 
Sbjct: 104 ILERLLIDKGEDADLKKKIQGAYCSIAELFMTDLCMQPDAEE--NCELYTKLALQ-IDAT 160

Query: 221 HRRVLDTLSPILKERGLLKDLEWLEGQCI 135
           +   L TL+ +   +  +++ +    +C+
Sbjct: 161 NAEALQTLASMRISQQKIEEAKDALSKCL 189


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +2

Query: 365 DRFPYRQPQSLLDLRGEFRIPRTL*KPGSLLNIC 466
           D  PY+Q  SL D  G  RIP+T    G LL  C
Sbjct: 4   DDSPYKQAFSLFDRHGTGRIPKT--SIGDLLRAC 35


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 299 TLVPNQRECIDAEILTDFEISYVNAYHRRVLDTLSPILKERGLLKDLEWL 150
           TL+  Q   +D  +L   E   ++    ++L  L+P   E+  LK LEWL
Sbjct: 68  TLLGEQSVQVDRVLLNRTENEKIDLECVQILRLLAPFFTEKNALKVLEWL 117


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/46 (21%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 391 ISIRSSWRIPYSPNFVEARFVAQYLSNVQSRIVGV-RTPRDTGRTL 525
           +  ++++  PY+P  ++  F+    S++    +G+  +P  TG++L
Sbjct: 7   VKFKTNFHHPYTPYDIQLEFMRSLYSSISDGKIGIFESPTGTGKSL 52


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 385 ATISIRSSWRIPYSPNFVEARFVAQYLSNVQS 480
           AT+ IR+S R+P       A F  QY +N+ S
Sbjct: 96  ATLIIRASLRVPLILEKAAAYFCLQYFTNLNS 127


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +1

Query: 379 STATISIRSSWR-IPYSPNFVEARFVAQYLSNVQSRIVGVRTPRD 510
           S AT S  S  R + Y PN     F    LSN+ S +   ++P D
Sbjct: 275 SRATSSRSSKTRSVVYEPNHRHTSFFGDTLSNLSSSLNDKKSPND 319


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 505 VASVPRRSWTERWTDIEQRTW 443
           V+   +R+WT  W  I  R W
Sbjct: 204 VSQQQQRAWTRAWNAIRNRAW 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,838
Number of Sequences: 5004
Number of extensions: 59677
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)