Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_T7_B01
(785 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 141 1e-34
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 138 8e-34
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 42 1e-04
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 28 1.3
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.3
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.3
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 7.0
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 141 bits (341), Expect = 1e-34
Identities = 66/103 (64%), Positives = 79/103 (76%)
Frame = -1
Query: 629 FREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 450
+RE RL++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W
Sbjct: 118 YREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIW 177
Query: 449 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 321
+LLAREVLR+RG L R WDV+ DL+FYRDPEE E++E+ K
Sbjct: 178 YLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/35 (54%), Positives = 22/35 (62%)
Frame = -2
Query: 772 EXPXXVFVISSRPFGQRAVXKFAAHTRCYAYCGTF 668
E P V V+S+R +G RAV KFAAHT A G F
Sbjct: 71 ENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRF 105
Score = 29.9 bits (64), Expect = 0.43
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = -3
Query: 693 GVTXIAXRFTPGAFTNQI 640
G T IA RFTPG FTN I
Sbjct: 97 GATAIAGRFTPGNFTNYI 114
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 138 bits (334), Expect = 8e-34
Identities = 65/101 (64%), Positives = 78/101 (77%)
Frame = -1
Query: 629 FREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 450
+RE RL+IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W
Sbjct: 119 YREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAW 178
Query: 449 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 327
+LLAREVLRLRG + R W+V+ DL+FYRDPEE E++E+Q
Sbjct: 179 YLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
Score = 45.2 bits (102), Expect = 1e-05
Identities = 22/35 (62%), Positives = 23/35 (65%)
Frame = -2
Query: 772 EXPXXVFVISSRPFGQRAVXKFAAHTRCYAYCGTF 668
E P V VISSRP+G RAV KFAAHT A G F
Sbjct: 72 ENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRF 106
Score = 29.9 bits (64), Expect = 0.43
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = -3
Query: 693 GVTXIAXRFTPGAFTNQI 640
G T IA RFTPG FTN I
Sbjct: 98 GATAIAGRFTPGNFTNYI 115
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 41.9 bits (94), Expect = 1e-04
Identities = 22/74 (29%), Positives = 38/74 (51%)
Frame = -1
Query: 656 LLLTRSKAAFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 477
L+ T K ++ L+++L+P ++ EA ++P I + +TD+ R V IP N
Sbjct: 168 LIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDD 227
Query: 476 SSHSIGLMWWLLAR 435
S L+ LL+R
Sbjct: 228 SLRCTDLIAGLLSR 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +1
Query: 370 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 468
N+S+T +++ SR ST RS STS AN H K E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 572 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 462
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 464 IGLMWWLLAREVLRLRGVLPRDQRWD 387
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -2
Query: 409 FPVTSAGML--WLICSSTVTLKKVKRM 335
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,554
Number of Sequences: 5004
Number of extensions: 53338
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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