Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_P24
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   6.5  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   8.6  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +1

Query: 682 PGVHLPAPPRNH---VQIPPKXLH 744
           PG H+P PP +H     +PP  +H
Sbjct: 203 PGEHMPPPPMHHKPGEHMPPPPMH 226



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +1

Query: 682 PGVHLPAPPRNH---VQIPPKXLH 744
           PG H+P PP +H     +PP  +H
Sbjct: 216 PGEHMPPPPMHHEPGEHMPPPPMH 239



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +1

Query: 682 PGVHLPAPPRNH---VQIPPKXLH 744
           PG H+P PP +H     +PP  +H
Sbjct: 229 PGEHMPPPPMHHEPGEHMPPPPMH 252



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +1

Query: 682 PGVHLPAPPRNH---VQIPPKXLH 744
           PG H+P PP +H     +PP  +H
Sbjct: 242 PGEHMPPPPMHHEPGEHMPPPPMH 265



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +1

Query: 682 PGVHLPAPPRNH---VQIPPKXLH 744
           PG H+P PP +H     +PP  +H
Sbjct: 255 PGEHMPPPPMHHEPGEHMPPPPMH 278



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +1

Query: 682 PGVHLPAPPRNH---VQIPPKXLH 744
           PG H+P PP +H     +PP  +H
Sbjct: 268 PGEHMPPPPMHHEPGEHMPPPPMH 291



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +1

Query: 682 PGVHLPAPPRNH---VQIPPKXLH 744
           PG H+P PP +H     +PP  +H
Sbjct: 281 PGEHMPPPPMHHEPGEHMPPPPMH 304



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +1

Query: 682 PGVHLPAPPRNH---VQIPPKXLH 744
           PG H+P PP +H     +PP  +H
Sbjct: 294 PGEHMPPPPMHHEPGEHMPPPPMH 317



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +1

Query: 682 PGVHLPAPPRNH---VQIPPKXLH 744
           PG H+P PP +H     +PP  +H
Sbjct: 307 PGEHMPPPPMHHEPGEHMPPPPMH 330


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 1/125 (0%)
 Frame = +3

Query: 72  TNSPPRKEXGLSXTIGGPVXLRPSXYSLALTYPRVSVPHR-ADGTPPDXHRIRLSPPCTN 248
           ++S P     ++  I G   + PS  S++L  P+   P   A+G  P  H +   P    
Sbjct: 60  SSSSPSTTGTVAVPINGANAVYPSTNSVSL--PQSYDPWLDANGVVPLPHDVASHPSYMV 117

Query: 249 PS*AVTSTHCSVWGXXXXCSGDLNPPPH*VXXPSHXCXR*ASRRVXXPPHIPNYSTPRTP 428
            S   TS H         CS + +P PH    P H     + + V  PP +P   +   P
Sbjct: 118 QS--PTSYHA--------CSNNQSPFPHSHHPPLHNPLPVSCQPVLRPPPVPQVPSHWYP 167

Query: 429 TCYPA 443
              P+
Sbjct: 168 VSLPS 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,960
Number of Sequences: 5004
Number of extensions: 34454
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)