Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_P24
         (915 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0610 - 25449085-25453284                                         37   0.019
08_01_0493 - 4297761-4298288                                           29   5.2  
03_01_0515 - 3864796-3865425                                           29   5.2  
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090...    29   6.8  
06_03_0868 - 25544933-25544938,25544939-25545142,25545494-255457...    28   9.0  
05_04_0231 + 19254766-19255153,19255245-19255480,19256609-192566...    28   9.0  

>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 37.1 bits (82), Expect = 0.019
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = +2

Query: 668  PPLXAPESTSLPPRGITCKFPQXXSTX*SXPKXHX*HPPPTPSXXQXMGXLRXH-PXXPX 844
            PP   PE  S PP G   K P   +   S P      PPPTP+          + P  P 
Sbjct: 882  PPTLTPE-ISPPPEG---KSPPSHTPESSSPPSKESEPPPTPTPKSSPPSHEEYVPPSPA 937

Query: 845  RAXPXPQXSXPPRH 886
            ++ P P+   PP H
Sbjct: 938  KSTPPPEEKSPPSH 951



 Score = 33.1 bits (72), Expect = 0.32
 Identities = 20/71 (28%), Positives = 26/71 (36%)
 Frame = +2

Query: 668  PPLXAPESTSLPPRGITCKFPQXXSTX*SXPKXHX*HPPPTPSXXQXMGXLRXHPXXPXR 847
            PP   PE +  PP G     P    +    P+ H   PPP  S           P  P +
Sbjct: 815  PP--TPEKSPSPPSGHEGTPPSPVKSSSPPPEAHVSSPPPEKSSSPPPEAHVSSPPPPEK 872

Query: 848  AXPXPQXSXPP 880
            + P P+   PP
Sbjct: 873  SPPPPETKSPP 883



 Score = 29.1 bits (62), Expect = 5.2
 Identities = 19/73 (26%), Positives = 25/73 (34%)
 Frame = +2

Query: 668  PPLXAPESTSLPPRGITCKFPQXXSTX*SXPKXHX*HPPPTPSXXQXMGXLRXHPXXPXR 847
            PP  +P  +S PP       P    +    P+ H   PPP P         +  P     
Sbjct: 832  PP--SPVKSSSPPPEAHVSSPPPEKSSSPPPEAHVSSPPP-PEKSPPPPETKSPPTLTPE 888

Query: 848  AXPXPQXSXPPRH 886
              P P+   PP H
Sbjct: 889  ISPPPEGKSPPSH 901


>08_01_0493 - 4297761-4298288
          Length = 175

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +3

Query: 516 PXMXSHN-SNPTHYLSSRXPXPHPXPXPXP 602
           P M  H+ S P H LS   P P P P P P
Sbjct: 96  PDMHHHHPSPPQHALSPAVPPPPPPPPPSP 125


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 20/73 (27%), Positives = 25/73 (34%)
 Frame = +2

Query: 662 PIPPLXAPESTSLPPRGITCKFPQXXSTX*SXPKXHX*HPPPTPSXXQXMGXLRXHPXXP 841
           P PP  A      PP  +T   P   +     P      PPP+ +       L   P  P
Sbjct: 40  PSPPTEASPPPLAPPPSVTSSPPPPAAGPLMPPPP----PPPSVTSSPPPPPLPPPPPPP 95

Query: 842 XRAXPXPQXSXPP 880
             + P P  S PP
Sbjct: 96  AASPPPPPPSPPP 108


>09_06_0107 +
           20907560-20908491,20908511-20908625,20908967-20909058,
           20909293-20909556,20910714-20911494
          Length = 727

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +3

Query: 471 YILALLXNXTSXLXXPXMXSHNSNPTHYLSSRXPXPHPXPXPXPQDHXP 617
           Y+ AL     + L      + + +P H++S+  P P   P P P    P
Sbjct: 41  YLRALRATGAALLQFASAEADHPHPHHHVSAAPPPPQTPPSPPPPPPPP 89


>06_03_0868 -
           25544933-25544938,25544939-25545142,25545494-25545751,
           25546625-25546906
          Length = 249

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 662 PIPPLXAPESTSLPPRGITCKFPQXXS 742
           P PPL AP   SLPPR  +   P   S
Sbjct: 12  PRPPLPAPRRPSLPPRATSILTPAPRS 38


>05_04_0231 +
           19254766-19255153,19255245-19255480,19256609-19256632,
           19257612-19258009,19258109-19258241,19258399-19258488,
           19258613-19258843
          Length = 499

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 208 GGVPSARCGTLTRGYVRAREY 146
           GG P++ CG+  RGY  +R Y
Sbjct: 104 GGAPASSCGSSVRGYNNSRYY 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,907,288
Number of Sequences: 37544
Number of extensions: 393636
Number of successful extensions: 1389
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)