Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_P24
         (915 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   6.1  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   6.1  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   6.1  
Z81493-2|CAB04040.1|  133|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/74 (25%), Positives = 22/74 (29%)
 Frame = +1

Query: 661 TNSXPXGPGVHLPAPPRNHVQIPPKXLHEXKXSKXXXXXXXXXXXXXXXXGXPPSPPLXX 840
           T S P  P    P PPR     PP        +                 G PP PP   
Sbjct: 277 TGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQK 336

Query: 841 VQGXXXTPXXXTPP 882
            Q    +P   +PP
Sbjct: 337 RQAPERSPPTGSPP 350


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/74 (25%), Positives = 22/74 (29%)
 Frame = +1

Query: 661 TNSXPXGPGVHLPAPPRNHVQIPPKXLHEXKXSKXXXXXXXXXXXXXXXXGXPPSPPLXX 840
           T S P  P    P PPR     PP        +                 G PP PP   
Sbjct: 298 TGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQK 357

Query: 841 VQGXXXTPXXXTPP 882
            Q    +P   +PP
Sbjct: 358 RQAPERSPPTGSPP 371


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/74 (25%), Positives = 22/74 (29%)
 Frame = +1

Query: 661 TNSXPXGPGVHLPAPPRNHVQIPPKXLHEXKXSKXXXXXXXXXXXXXXXXGXPPSPPLXX 840
           T S P  P    P PPR     PP        +                 G PP PP   
Sbjct: 283 TGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQK 342

Query: 841 VQGXXXTPXXXTPP 882
            Q    +P   +PP
Sbjct: 343 RQAPERSPPTGSPP 356


>Z81493-2|CAB04040.1|  133|Caenorhabditis elegans Hypothetical
           protein F01D5.2 protein.
          Length = 133

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 228 LSPPCTNPS*AVTSTHCSVWGXXXXCS 308
           L PP  NP+   T+ HC  W     C+
Sbjct: 66  LVPPTANPNCVDTNVHCKSWAKQGYCT 92


>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical protein
            F54D11.2 protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 817  PPSPPLXXVQGXXXTPXXXTPPXP 888
            PP PPL  +Q    TP    PP P
Sbjct: 1103 PPPPPLPILQNPVATPMSQQPPLP 1126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,307,490
Number of Sequences: 27780
Number of extensions: 250487
Number of successful extensions: 581
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)