Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_P16
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    35   0.016
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.2  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    26   5.6  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    25   9.8  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 34.7 bits (76), Expect = 0.016
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
 Frame = +3

Query: 375 CTCPEPLVLRRGHCVEPTCSPACDSYSSCTDFNVCTCVNNTIALNGS--QCAPVCPDGYY 548
           C  P PL+   G C  P C+   + +  C   ++    +N   +N    +C  VC +   
Sbjct: 290 CEHPCPLLCHPGPC--PPCTATVEKFCLCGKESIHARCSNISKVNTEPFRCENVCDELLP 347

Query: 549 NDPVECSPRCERCVNGTCTEPGLCTCDSG 635
                C  RC   + G C EP    C  G
Sbjct: 348 CGEHTCKKRCHSGLCGACFEPINAKCYCG 376


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 621 TCDSGYKNIDDVCVPQCLDCRNGECVAPNDCLCHDNYXMSNGTCP 755
           TC+S  K+   +C+ QC  C +  C   + C   +    S   CP
Sbjct: 75  TCESCKKHTCAICIRQCHKCESNVC---SMCSKQERTFESEAFCP 116


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 19  LCKRSRRNANIELCCVEMFYQFCYSSSAND 108
           LCK+  RNA    CC ++F + C  ++  D
Sbjct: 284 LCKKLARNACRTPCCDKLFCEECIQTALLD 313


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 255 VSIGKSQSCKTGWIYEAKTDSCVPKCTSGCVNGTCEAPE 371
           +S+ +     TG IYEA T++  PK  S         PE
Sbjct: 330 MSLARGLDYYTGIIYEAVTEASAPKIKSSAEKKKSADPE 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,074,986
Number of Sequences: 5004
Number of extensions: 63504
Number of successful extensions: 167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)