Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_P14
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   3.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.2  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    25   9.6  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   9.6  

>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = -3

Query: 531  PRVKP---PRSNYTFAGAPFPPRAEVXTPP 451
            PRVKP   PRS  + +G P P    V  PP
Sbjct: 1015 PRVKPLLPPRSGSSSSGVPAPNLTPVNVPP 1044


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -3

Query: 534 PPRVKPPRSNYTFAGAPFPPRAEVXTPP 451
           PP   PPRSN      P PP+     PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 186 SESRLSPSAEGPTSQSERGSSTDHP 112
           S+   S  A+GP+SQ+  G ST  P
Sbjct: 508 SKENKSSVADGPSSQAHNGPSTQPP 532


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = +1

Query: 535 SVLEAWSRRLADPSAGLRTVEA-----VRPVLADWVGRDRGMPHLPANXNAYR 678
           S L+A  +RL     G  TV A     V P  + W  +  G+P+ P +   YR
Sbjct: 198 SWLQAQQQRLVSAGNGRETVNASASGAVNPTSSQWSDQRLGVPYGPDSPLYYR 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,342
Number of Sequences: 5004
Number of extensions: 45603
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)