Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_P13
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    31   0.25 
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    31   0.25 
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   3.1  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    26   7.1  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    26   7.1  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = +1

Query: 367 DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 546
           DI   FD + H+ LI  L +     R + +IR  L N  +      T +R ++   G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQ 423

Query: 547 GSALSP 564
           GS +SP
Sbjct: 424 GSIVSP 429


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +2

Query: 104 SAYTSRANRRTKPRVTAPSVSS 169
           S  T R NR T+PRV+APS SS
Sbjct: 45  SGRTRRRNRNTRPRVSAPSSSS 66


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
 Frame = +1

Query: 463 DYLSNRSFRYRVEGTRSRPRHVTAGVPQ----GSALSPXTIQFVYQRYTPVSGDPSGRSS 630
           DY +NR   Y      +   + T G+      G   +P  I + +  Y P+  DP   S 
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPGNI-YPFSMYKPLEADPQYLSV 177

Query: 631 PMTPPSTTRVGRRXCFIDXFRPXLPPWGQWFPE 729
           P + PS    G    + +  R    P  Q+F E
Sbjct: 178 PSSMPSRREAGMAYGYQNYKRGGYTPNTQYFEE 210


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 52  AAMTNCIFPAAWKEADVIGIHKPGKPKNETASYRPISLLPAIGKLY 189
           +++ +C+   +W E  VI   +  K   E   Y P S+L   GK Y
Sbjct: 164 SSLPDCLDVTSWTENGVIMGARHKKYAIEGVQYHPESILSEYGKEY 209


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 659 TRVVDGGVIGEERPDGSPE 603
           TRV DG ++GE+ P+ S E
Sbjct: 635 TRVYDGQIVGEDAPEISKE 653


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,480,869
Number of Sequences: 5004
Number of extensions: 76497
Number of successful extensions: 234
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)