Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_P12
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   2.4  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   3.2  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   7.4  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    26   7.4  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    26   7.4  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    25   9.7  

>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 164 SICAQSAPSFTDW-KRDASGVRKSRT*LDNFILPERTSSVRLHFRY 30
           ++C + +  + DW +R +SG+++  T  +  I  ER   +  HF Y
Sbjct: 861 ALCDKMSEIWADWVQRTSSGIQEEDTIPNEMIDEERMLDLEKHFMY 906


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 336  SWRRYKILKQSHPVKRMIRGIGAETTSTYSQ 428
            S + YK L Q + VK ++  + +ET S+Y++
Sbjct: 1082 SAKNYKSLIQKYKVKSVLSAVDSETASSYAK 1112


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 517 DERFRHVTTLHAWNETPFVRVSRSSHPFK 431
           DE+  ++T  H WN      V R S P K
Sbjct: 34  DEKIEYITAQHDWNPVYEAVVPRKSKPGK 62


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 203 KSGXNPVWRTVAILTCKSIVGTGYRGERLIEPSS 304
           KS   PV  T     CK  +GT ++GER++ P++
Sbjct: 6   KSTWAPVPSTKPSQPCK--IGTDFKGERIVYPAN 37


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 153 STNAGARKMVNYAWSGRSQGETLYGGP 233
           STN G   + NY  +GR +G+ ++  P
Sbjct: 378 STNTGFTVLGNYQTAGRGRGQNMWVSP 404


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = -1

Query: 679 FKXPGFCPFAPRE-VSVLAELXLGHLRYSLTDVPPQSNSPPGSVLEPDHAGVLNGDERFR 503
           F  P   P  P E + +L       LR    DVPP  N     V +  H G L+  +  +
Sbjct: 628 FPAPEDFPLMPAEPIRLLLRPRNFFLRNPALDVPPSKNVTTSEVKQAHHHGNLHMMDMMK 687

Query: 502 HVT 494
            +T
Sbjct: 688 SLT 690


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,927,146
Number of Sequences: 5004
Number of extensions: 61207
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)