Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_P12
(817 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399 29 3.3
07_01_1163 - 11011362-11011760,11011803-11011847,11011880-110120... 29 4.4
10_06_0087 - 10520708-10520823,10521041-10521130,10521571-105219... 29 5.8
02_04_0258 + 21339682-21339806,21340635-21340730,21340905-213409... 29 5.8
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 5.8
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 7.7
01_07_0101 + 41086735-41086809,41088634-41088721,41089727-410899... 28 7.7
01_06_0456 + 29521282-29522064 28 7.7
>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
Length = 146
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +1
Query: 463 RTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGAVHLSKNNAGVLRXAQRGQKP 642
R + +R E G +RR L D +RG+ + A H AG + RG KP
Sbjct: 59 RCIAEGRREEEEEVGRSRRGKDLDLDDMRGYGET-----ATHHGLRLAGREEVSPRGGKP 113
Query: 643 RVEQKGK 663
RV+ G+
Sbjct: 114 RVDNGGR 120
>07_01_1163 -
11011362-11011760,11011803-11011847,11011880-11012014,
11012101-11012994
Length = 490
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -2
Query: 384 FALPDETVLKFYIDASYPEGNFGRNQLLDGSISLSPLYPVPTIDLHVRIATV-LHTGFXP 208
+ + D +K+YI P ++++ S PL+P+ ++LH+R + + G P
Sbjct: 341 YVVIDYNFVKYYIAKCQPSRP---HKVIKNIRSYDPLHPIECMELHLRKVVIRYYEGKRP 397
Query: 207 DFDLTR 190
D D +
Sbjct: 398 DVDFAK 403
>10_06_0087 -
10520708-10520823,10521041-10521130,10521571-10521901,
10522248-10522409,10522506-10522726,10523852-10524056
Length = 374
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 170 PKDGELCLVRSKSGXNPVWRTVAILTCKSIVG 265
PK+GE +++SK+G V TV I T IVG
Sbjct: 74 PKNGENAIIKSKTGYWKVVGTVRIPTSTVIVG 105
>02_04_0258 +
21339682-21339806,21340635-21340730,21340905-21340980,
21341085-21341143,21341280-21341380,21341447-21341773,
21341861-21342021,21342100-21342303,21342735-21342966,
21343629-21344239
Length = 663
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +2
Query: 152 EHKCWGPKDGELCLVRSKSGXNPVWRTVAILTCKSIVGTGYRGERLIEPSSSWFRPK 322
E + W ++ E +V+ + G P+ +T K VGT GE + +SSW R +
Sbjct: 173 EDEDWTEEEFESHIVKEREGKRPLLTGDLQVTLKEGVGT--IGELIFTDNSSWIRSR 227
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 504 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 593
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 583 PPQSNSPPGSVLEPDHAGVLNGDE 512
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>01_07_0101 +
41086735-41086809,41088634-41088721,41089727-41089923,
41090077-41090266,41090469-41090860,41091390-41091965
Length = 505
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 521 RRRAFPPRHHSARLERNTVRSSKPEFS 441
RR P HHS L R RSS+ E S
Sbjct: 406 RRSVRSPNHHSPDLRREAARSSRAEVS 432
>01_06_0456 + 29521282-29522064
Length = 260
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 563 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER 474
AW+C P +G+RG +RRR P S R R
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSR 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,003,680
Number of Sequences: 37544
Number of extensions: 445882
Number of successful extensions: 1073
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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