Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_P11
(991 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0172 - 6131559-6131990 24 4.4
01_05_0490 + 22672241-22674679 24 4.9
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 29 7.6
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358... 25 7.7
01_07_0378 - 43167805-43169152,43169258-43169326,43169473-431695... 26 8.1
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294... 26 8.1
10_01_0122 + 1495426-1495815 26 9.9
>03_02_0172 - 6131559-6131990
Length = 143
Score = 24.2 bits (50), Expect(2) = 4.4
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 542 GGGGGGGGXXXXXXXXKK 595
GGGGGGGG KK
Sbjct: 58 GGGGGGGGGGGGGGGGKK 75
Score = 23.8 bits (49), Expect(2) = 4.4
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = +2
Query: 473 PPXKNIILXXXXXXXXXXXXXXXGGGGGGGG 565
PP + L GGGGGGGG
Sbjct: 36 PPRSSSFLCQSSSPSEPPGSPAGGGGGGGGG 66
>01_05_0490 + 22672241-22674679
Length = 812
Score = 23.8 bits (49), Expect(2) = 4.9
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 565 PPPPPPP 545
PPPPPPP
Sbjct: 641 PPPPPPP 647
Score = 23.8 bits (49), Expect(2) = 4.9
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 562 PPPPPPP 542
PPPPPPP
Sbjct: 664 PPPPPPP 670
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 28.7 bits (61), Expect = 7.6
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -3
Query: 917 KKKKKKKXXXXXXXXXXXXXXXXXXXKKKKKKKKK 813
KKKKKKK KKKKKKKKK
Sbjct: 68 KKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKK 102
Score = 28.7 bits (61), Expect = 7.6
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -3
Query: 917 KKKKKKKXXXXXXXXXXXXXXXXXXXKKKKKKKKK 813
KKKKKKK KKKKKKKKK
Sbjct: 69 KKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKK 103
Score = 28.7 bits (61), Expect = 7.6
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -3
Query: 917 KKKKKKKXXXXXXXXXXXXXXXXXXXKKKKKKKKK 813
KKKKKKK KKKKKKKKK
Sbjct: 70 KKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKK 104
Score = 28.7 bits (61), Expect = 7.6
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -3
Query: 917 KKKKKKKXXXXXXXXXXXXXXXXXXXKKKKKKKKK 813
KKKKKKK KKKKKKKKK
Sbjct: 71 KKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKK 105
Score = 28.7 bits (61), Expect = 7.6
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -3
Query: 917 KKKKKKKXXXXXXXXXXXXXXXXXXXKKKKKKKKK 813
KKKKKKK KKKKKKKKK
Sbjct: 72 KKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKK 106
Score = 28.7 bits (61), Expect = 7.6
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -3
Query: 917 KKKKKKKXXXXXXXXXXXXXXXXXXXKKKKKKKKK 813
KKKKKKK KKKKKKKKK
Sbjct: 73 KKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKK 107
>02_04_0371 +
22434710-22435102,22435428-22435624,22435707-22435824,
22436458-22436574,22436702-22436803,22437431-22437487,
22437976-22438044,22438423-22438533,22438597-22438791,
22439023-22439121,22439656-22440222,22440344-22440568,
22441036-22441338,22441640-22441707,22441947-22442105,
22442230-22442475,22442549-22442680,22443243-22443351,
22444131-22444283,22444359-22444601,22444695-22444862,
22445013-22445156,22445238-22445699,22446495-22446791,
22446867-22447024,22447139-22447246,22447474-22447732
Length = 1752
Score = 24.6 bits (51), Expect(2) = 7.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 578 GXXXXPPPPPPP 543
G PPPPPPP
Sbjct: 20 GTFTTPPPPPPP 31
Score = 22.2 bits (45), Expect(2) = 7.7
Identities = 9/31 (29%), Positives = 12/31 (38%)
Frame = -3
Query: 560 PPPPPPXXXXXXKKNXXXXXXPKLYFXXGGG 468
PPPPPP ++ + GGG
Sbjct: 25 PPPPPPPPLLSPRRPLLAPRRRRCLCGGGGG 55
>01_07_0378 -
43167805-43169152,43169258-43169326,43169473-43169544,
43169677-43169745,43169979-43171161,43171239-43171365
Length = 955
Score = 25.8 bits (54), Expect(2) = 8.1
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3
Query: 813 FFFFFFFFF 839
FFFFFFFFF
Sbjct: 16 FFFFFFFFF 24
Score = 21.0 bits (42), Expect(2) = 8.1
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 897 FFFFFFF 917
FFFFFFF
Sbjct: 20 FFFFFFF 26
>03_05_0843 +
28126480-28127007,28127092-28127457,28129388-28129487,
28130266-28130546,28130643-28130705,28131276-28131431,
28131913-28132080,28132158-28132298,28132714-28132840,
28132888-28132994,28134142-28134372,28134446-28134559,
28135091-28135261
Length = 850
Score = 26.2 bits (55), Expect(2) = 8.1
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = -3
Query: 560 PPPPPPXXXXXXKKNXXXXXXPKLYFXXGGG 468
PPPPPP + N L + GGG
Sbjct: 38 PPPPPPLPPPPPRSNSAPPERRALRWAAGGG 68
Score = 20.6 bits (41), Expect(2) = 8.1
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -3
Query: 389 GGGGGXXNXPP 357
GGG G N PP
Sbjct: 66 GGGSGGGNSPP 76
>10_01_0122 + 1495426-1495815
Length = 129
Score = 25.8 bits (54), Expect(2) = 9.9
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3
Query: 813 FFFFFFFFF 839
FFFFFFFFF
Sbjct: 14 FFFFFFFFF 22
Score = 21.0 bits (42), Expect(2) = 9.9
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 897 FFFFFFF 917
FFFFFFF
Sbjct: 17 FFFFFFF 23
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,277,234
Number of Sequences: 37544
Number of extensions: 400109
Number of successful extensions: 33304
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9147
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2893540780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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