Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_P09
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.006
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.043
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.92 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.9  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    26   6.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 17/48 (35%), Positives = 17/48 (35%)
 Frame = +2

Query: 530 SPPPXXXGGXPXXXXXXXXXXXXPPPXGGXXPPPPPPXXXXXXXPPPP 673
           SPPP                   P P  G  PPPPPP       PPPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 36.3 bits (80), Expect = 0.006
 Identities = 17/47 (36%), Positives = 17/47 (36%)
 Frame = +2

Query: 533 PPPXXXGGXPXXXXXXXXXXXXPPPXGGXXPPPPPPXXXXXXXPPPP 673
           PPP      P             P  GG  PPPPPP       PPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = +2

Query: 599 PPPXGGXXPPPPPPXXXXXXXPPPPXXXXXXXXXXXPXXP 718
           P P     P PPP        PPPP           P  P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.5 bits (73), Expect = 0.043
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +2

Query: 605 PXGGXXPPPPPPXXXXXXXPPPP 673
           P G   PPPPPP       PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27



 Score = 29.5 bits (63), Expect = 0.69
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 602 PPXGGXXPPPPPPXXXXXXXPPPP 673
           PP     PPPPP        PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 13/39 (33%), Positives = 13/39 (33%)
 Frame = +2

Query: 602 PPXGGXXPPPPPPXXXXXXXPPPPXXXXXXXXXXXPXXP 718
           PP G   PPPPPP         PP           P  P
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +2

Query: 599 PPPXGGXXPPPPPPXXXXXXXPPPP 673
           PP      PPPPP         PPP
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = +2

Query: 599  PPPXGGXXPPP--PPPXXXXXXXPPPP 673
            PPP     PPP  PP        PPPP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = +2

Query: 599  PPPXGGXXPPPP--PPXXXXXXXPPPP 673
            PPP     PPPP  PP        PPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 206 KKTPKISRXPPPXXXKTPPPP 268
           K TPKI R PP      PP P
Sbjct: 340 KTTPKIQRLPPSSIQIPPPKP 360


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/47 (29%), Positives = 15/47 (31%)
 Frame = +2

Query: 530  SPPPXXXGGXPXXXXXXXXXXXXPPPXGGXXPPPPPPXXXXXXXPPP 670
            +PP     G P            P P  G  PP P P       PPP
Sbjct: 1149 APPVPAPSGAPPVPKPSVAAPPVPAPSSG-IPPVPKPAAGVPPVPPP 1194



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/46 (30%), Positives = 14/46 (30%)
 Frame = +2

Query: 533  PPPXXXGGXPXXXXXXXXXXXXPPPXGGXXPPPPPPXXXXXXXPPP 670
            P P    G P            PPP     PP P P       PPP
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPP--SEAPPVPKPSVGVPPVPPP 1213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.154    0.553 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,847,083
Number of Sequences: 5004
Number of extensions: 30055
Number of successful extensions: 194
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)