Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_P07
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr...    26   7.2  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    26   7.2  

>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 190 IVPVSLSLPFAPVPLFPSSPG 128
           I+ + L++PF  +PL P+ PG
Sbjct: 126 IIGLPLTIPFILIPLIPNIPG 146


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 184 PVSLSLPFAPVPLFPSSPGIDCNPVSGEVVAQVA 83
           P  L  P  PVP  P+ PG++   +   V + +A
Sbjct: 425 PAPLVTPSLPVPSIPAVPGMEAMAMPPGVTSSIA 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,307
Number of Sequences: 5004
Number of extensions: 25153
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)