Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_P03
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.3  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   5.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   5.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   5.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +3

Query: 393 PPPPPLFFFXXXXKKKXGGGXXXKXXGXPPPPPP 494
           PPPPP        K   G G        PPPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNS--SLPPPPPP 342


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +3

Query: 393 PPPPPLFFFXXXXKKKXGGGXXXKXXGXPPPPPP 494
           PPPPP                     G PPPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 709 PPPPPPXPPXXGXG 668
           PPPPPP PP    G
Sbjct: 775 PPPPPPPPPAVSAG 788



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 709 PPPPPPXPPXXGXG 668
           PPPPPP P   G G
Sbjct: 761 PPPPPPPPGVAGAG 774


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 709 PPPPPPXPP 683
           PPPPPP PP
Sbjct: 306 PPPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 708 PPPPPPXPP 682
           PPPPPP PP
Sbjct: 189 PPPPPPPPP 197


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 708 PPPPPPXPP 682
           PPPPPP PP
Sbjct: 945 PPPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,695,750
Number of Sequences: 5004
Number of extensions: 21962
Number of successful extensions: 260
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)