Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_P01
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.51
08_02_1476 - 27372288-27372310,27372508-27372586,27372818-273730... 31 1.6
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.1
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.6
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 29 4.7
09_02_0426 + 9176147-9176297,9177118-9177624,9177985-9178715 28 8.3
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 8.3
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 8.3
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.51
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 345 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 181
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>08_02_1476 -
27372288-27372310,27372508-27372586,27372818-27373085,
27373346-27373410,27373611-27373757
Length = 193
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 430 PGXGERSPRRWLQPRLAVPRQASTSV 353
PG R PRRW + R +P QA+T V
Sbjct: 26 PGHRRRHPRRWTRVRDQLPTQATTKV 51
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 243 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 359
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 258 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 169
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/65 (30%), Positives = 24/65 (36%)
Frame = -2
Query: 836 GXDPPSXXXXTXRPXXXXANAHGPXXRXVXXPRXSRXTRPAXXGXGXVPPWAHGXPXSAP 657
G PP P N+ G P S+ PA G G PP +HG P AP
Sbjct: 1153 GSSPPPASPPPSTPSAPPTNSSGSAPSP---PSPSQSAPPANTGGGGSPPPSHGSP-PAP 1208
Query: 656 QRXXS 642
+ S
Sbjct: 1209 KAVQS 1213
>09_02_0426 + 9176147-9176297,9177118-9177624,9177985-9178715
Length = 462
Score = 28.3 bits (60), Expect = 8.3
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = +3
Query: 222 ETC*HS*VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTLVEA*RGTAXRGCNH 401
E C + V V + D RS L T++ ++ G H A L T +E G R C H
Sbjct: 57 EKCKNVEVNVQQEDQQRSIPLLLYLTSQSDKNGSTPLHFAASLKTSIE---GFTSRLCEH 113
Query: 402 RRGLRSP 422
R +SP
Sbjct: 114 FRPKQSP 120
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 130 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 285
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -1
Query: 372 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 205
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,043,276
Number of Sequences: 37544
Number of extensions: 418754
Number of successful extensions: 1178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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