Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_O23
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   6.0  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   8.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   8.0  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   8.0  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   8.0  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 618 GQNWXIQISXPXGWXTRLS 674
           GQ   +Q S P GW T +S
Sbjct: 73  GQYARVQQSMPDGWETEIS 91


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 349 SSLKNHYFHCFITYSVGRK 405
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 1   YWKTKHCDGPRGC*RNVISC 60
           YW TK+C  P    R+ +SC
Sbjct: 104 YWNTKNCVNPYD--RDSLSC 121


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 328 VGDRFARSSLKNHYFHCFI 384
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 578 GHLXIFDRCTAPVKLPPG 525
           G L +FDR + PV +P G
Sbjct: 7   GILYLFDRPSEPVYVPKG 24


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 328 VGDRFARSSLKNHYFHCFI 384
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 356 SDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSP 246
           +D R   SP   TP+ + Y   +E+ +  S F  D+P
Sbjct: 21  NDKRIYLSPR--TPIKNVYKNNIETKNQLSPFNIDTP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,848
Number of Sequences: 438
Number of extensions: 4538
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)