Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_O10
         (840 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   8.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 605 SCPVAGTPPGTLVFQNSLRVSEA-RKQTI 522
           +CPVAG P  ++V++   RV    RKQ +
Sbjct: 511 TCPVAGYPIESIVWERDTRVLPINRKQKV 539


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 602 CPVAGTPPGTLVFQNS 555
           C V GTPP  LV++ +
Sbjct: 332 CDVTGTPPPPLVWRRN 347


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -2

Query: 719 PGXGLKSPXPXXGPLEFHRXARGTIXXPP 633
           P     SP P   PL+     R T+  PP
Sbjct: 438 PSSNPVSPVPSPDPLDLAIPVRETLILPP 466


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,541
Number of Sequences: 438
Number of extensions: 4401
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)