Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_O09
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    28   1.9  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    27   3.4  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    26   7.8  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   7.8  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    26   7.8  

>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +3

Query: 474 VEVGVTGLRYLGLELDGRWNFRAHFEKLGPRL-MATAGSLSRLLPNVGXPDTV 629
           V+  + G  Y   + +   N++AHF   GP +    AG L   +   G   T+
Sbjct: 181 VDESIPGKGYFANQFENPANWQAHFNSTGPEIWRQCAGKLDAFIAGSGTGGTI 233


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 396 FSRATSRPSLRILPTTNATPAQARRAD 316
           FS+ T +P   + PTT  TP  A + D
Sbjct: 583 FSKTTIKPETPLTPTTTPTPRTAAQED 609


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
 Frame = -1

Query: 594 DSAIQPSPSVGG--PTSRNERGSSNDRPIRDRGTVTQSPRPRRGRLQSPGGPRVAALSQP 421
           D  ++ SP V    P S N   SS+   +++      SP+P R  +       V +  QP
Sbjct: 114 DGILRDSPIVSALEPPSSN---SSSSPQLQNLKHQLSSPQPSRAPIDRSSSNPVTSSQQP 170

Query: 420 L*NSRAWDFSRATSRPSLRILP---TTNATPAQARRAD 316
             +      S+   RP  R      ++NA P+ +R  D
Sbjct: 171 PNDRSTLSSSQKAKRPLKRSYSEKNSSNAEPSGSRSGD 208


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 426 QPL*NSRAWDFSRATSRPSLRILPTTNATPAQARRADSW*FL 301
           Q + ++RAW +       S    PT + +PAQ    DSW +L
Sbjct: 517 QAMNSARAW-YIHGCYNGSATSYPTVDLSPAQRGCQDSWNYL 557


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 132 AVLRFPVERGVPQGVGPWALS 194
           +VL++PV +GVP    PWA+S
Sbjct: 386 SVLKYPVPKGVP----PWAMS 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,339,676
Number of Sequences: 5004
Number of extensions: 72172
Number of successful extensions: 242
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)