Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_O09
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.38 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.88 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   8.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   8.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
 Frame = -1

Query: 579  PSPSVGGPTSRNE--RG--SSNDRPIRDRG----TVTQSPRPR-RGRLQSPGGPRVAALS 427
            P P +   +S +E  RG  +S  RP+ +R     TV  SP P  RGR    G  R+ +  
Sbjct: 1340 PVPRLAQDSSEDESYRGPSASGGRPVPERPERVPTVDLSPSPSDRGR-NDDGSDRLTSPP 1398

Query: 426  QPL*NSRAWDFSRATSRPSLRI 361
             PL  SRA      ++R S ++
Sbjct: 1399 TPLSISRAGSRDEDSTRDSTKL 1420



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 600  RADSAIQPSPSVGGPTSRNERGSSNDRPIRDRGTVTQSPRP-RRGRL 463
            ++  A +P P+ GG  +R +RG   +    DR ++ ++ R  +RG +
Sbjct: 1017 QSQEANKPKPATGGKGTRPKRGKYRN---YDRDSLVEAVRAVQRGEM 1060


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -2

Query: 341 PLRRQDEQTLGSFSPGPRPTCH--PRNTQRLGP 249
           P+  Q  Q   S +PGP+P+ H  P+  QR  P
Sbjct: 7   PIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSP 39


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/47 (23%), Positives = 19/47 (40%)
 Frame = -2

Query: 638 AAHHRVRPSDVWQEPTQRSSRRHQSGAQLLEMSAEVPTTVQFETEVP 498
           A +  + P D  +   Q  S  H +   + +   +VP  V    E+P
Sbjct: 164 AMNFLIYPHDTQECKLQMESLSHTTDEMIFQWDPDVPLVVDENIELP 210


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 44   RISWRPRVPPPTDRVLSRGQ 103
            R +WR + PPP     S GQ
Sbjct: 1347 RTAWRQQQPPPPPPPPSSGQ 1366


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -2

Query: 320 QTLGSFSPGPRPTCHPRNTQRLGPGEGRAGRSSEPSR 210
           +T  S SP PR    P ++    P    A  + +PS+
Sbjct: 506 ETNSSPSPNPRIASAPSSSTSSSPPAKGAAAAGQPSK 542


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 445 PGGGSLPAPVKQQGLGFLE 389
           PG GSLPA     G+  +E
Sbjct: 236 PGSGSLPASPADSGVSDVE 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,808
Number of Sequences: 438
Number of extensions: 6772
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)