Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_O06
(783 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.99
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 0.99
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.3
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.0
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 27 3.0
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 3.0
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 27 4.0
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.0
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 5.3
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 26 5.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 5.3
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 7.0
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 25 9.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.3
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 25 9.3
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 9.3
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe... 25 9.3
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 0.99
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 4/111 (3%)
Frame = +3
Query: 258 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 437
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 438 VEGVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 578
V +TP ++ ++ + +T Y P+ +P+ TN
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590
Score = 27.9 bits (59), Expect = 1.7
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
Frame = +3
Query: 270 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 443
T +N T S+P S+ + +V + S P P+T C T+ +
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Query: 444 GVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 578
V +TP ++ ++ + +T Y P+ +P+ TN
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 0.99
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +3
Query: 258 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 428
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 429 DVTVEGVNVLATPSSS 476
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 505 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 386
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 240 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 353
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = +1
Query: 487 SAVSPLCIKPPSPAISATSTRSSNPRFHTPTTPDLTSIXINPLKPY*XEFAPGVKASV 660
S+ + + A+ ++ S F PTT S+ I+P K P V+A V
Sbjct: 56 SSTNSTTLPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADV 113
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +1
Query: 517 PSPAISATSTRSSN---PRFHTPTTPD 588
P P+IS T+T SS H PTTPD
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPD 299
>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 26.6 bits (56), Expect = 4.0
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 460 PPLHPLALLSAVSPLCIKPP-SPAISATSTRSSNPRFHTPTTPDLTSIXINPLKPY 624
PP+ P L +A +PP +P S ++T SSN TP D T I + PY
Sbjct: 149 PPIPPPHLPNASGSSVYQPPYTPFRSVSTTSSSNDTSITP-FGDQTPILSSSSDPY 203
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 321 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 410
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +1
Query: 409 TFVGLLLTSQLKESMCWPPLHPLALLSAVSPLCIKPPSPAISATS 543
TF+ ++ TS++K++ +PP +P +VS + P+ +IS+ S
Sbjct: 106 TFLPVIETSKVKDANHFPPNYPEPKNDSVSSNIDEFPNDSISSAS 150
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 26.2 bits (55), Expect = 5.3
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +1
Query: 376 PPLASKYQSQLTFVGLL--LTSQLKESM--CWPPLHPLALLSAVSPLCIKPPSPAISATS 543
P +++Y + F+ L L L E + +P L P + SPL K S + S
Sbjct: 24 PHTSNEYSGKPEFINLSPDLEENLDEKLMSAFPGLEPHVFQHSQSPLSHKDASLLATMPS 83
Query: 544 TRSSNP 561
SSNP
Sbjct: 84 VASSNP 89
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1
Query: 520 SPAISATSTRSSNPRFHTPTTPDLTS 597
S IS +ST N FH PT TS
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTS 826
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 490 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 356
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = +1
Query: 511 KPPSPAISATSTRSSNPRFHTPTTPDLTSIXINPLKPY 624
+PPS A+ + + P P P + + NP P+
Sbjct: 245 RPPSMALLPSKQSTYWPALAAPVYPSMKDVPNNPFTPF 282
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 460 PPLHPLALLSAVSPLCIKPPSPAISAT 540
PP P A ++A +P PP P + T
Sbjct: 908 PPPPPTASMTASAPAIASPPPPKVGET 934
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 501 LMHQATLPCDLGYINPIIKSPIPYTNHP 584
+ HQA L C GY + + +P+ N P
Sbjct: 348 ICHQAILRCIYGYYHNLSLEELPFINVP 375
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.4 bits (53), Expect = 9.3
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +1
Query: 508 IKPPSPAISATSTRSSNPRF-HTPTTPDLTSIXINPLKPY*XEFAPGVKASVVIKR 672
++PPSP+ S+ S P F P T T +N K EF P A V R
Sbjct: 461 VEPPSPSKEIKSSHFSVPEFKFEPKTEATTDKKLNVPK---FEFKPTATADVQTNR 513
>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 163
Score = 25.4 bits (53), Expect = 9.3
Identities = 21/92 (22%), Positives = 35/92 (38%)
Frame = +1
Query: 346 LSILRLSFFLPPLASKYQSQLTFVGLLLTSQLKESMCWPPLHPLALLSAVSPLCIKPPSP 525
+S+ R+ P + +Q F G LL W P LAL+ V +
Sbjct: 41 VSLPRMYAVKPRIQKNFQDNYRFYGTLLCICWLYFFIWYPFALLALMVGVFLSFVMHGLG 100
Query: 526 AISATSTRSSNPRFHTPTTPDLTSIXINPLKP 621
+++ +P++ P +T I I L P
Sbjct: 101 SLTINQNIRLDPKYSIPGVCAVTLIVIMFLAP 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,649
Number of Sequences: 5004
Number of extensions: 53470
Number of successful extensions: 233
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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