Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_O02
(802 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 62 9e-11
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 38 0.002
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 31 0.25
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 30 0.33
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 29 0.77
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 29 0.77
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.3
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 28 1.8
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 1.8
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 5.4
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 26 5.4
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 5.4
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 7.2
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 25 9.5
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 9.5
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.5
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 25 9.5
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 25 9.5
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 25 9.5
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 25 9.5
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 9.5
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 62.1 bits (144), Expect = 9e-11
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 3/142 (2%)
Frame = +3
Query: 159 EAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLLRVVFT-D 335
E +E C +C + + Y + C+H +C C+ R+R L EC C+ + V+ T D
Sbjct: 73 EQDEDEQICFICAEGITYSCVLPCNHRMCHVCALRLRALYKTKECTFCKTEWDTVLITKD 132
Query: 336 SIHPYKELGNREYPDRLFERQYKIVFCSEDIKNAYENLLENRC--KICDKIPPFRNFSLL 509
++ + P + + + IV+ E + LL+ C CD + + L
Sbjct: 133 HEIDIHDVDLAKLPFQ--DEKLGIVYSDEHAQEESNLLLQFNCPEDACD--ITCKGWFDL 188
Query: 510 NDHMRRVHERFFCDLCVNHLKI 575
H + H +FFCDLCV + K+
Sbjct: 189 KLHAKVKHHKFFCDLCVKNKKV 210
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +2
Query: 575 FTNERRCYTRQELAHHRRKGD----LDDTSHRGHPLCEFCXKRIXD 700
FT+E ++++ L H GD L+ T +GHP CEFC D
Sbjct: 211 FTHEHTLFSKKGLTKHNEVGDQGSDLEITGFKGHPKCEFCNTHFYD 256
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 37.5 bits (83), Expect = 0.002
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Frame = +3
Query: 108 YRNAFTES*INNTTIMSEAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQN 287
Y A E ++ ++ E + E C +CF + + C H C C M+ L
Sbjct: 145 YETAVAEF-LHMEDLLQENVSRELECQICFGMLYDPVVSPCGHTFCGPC--LMQALTQSP 201
Query: 288 ECPICRKDLLRVVFTD--SIHPYKELGNREYPDRLFERQ 398
+CP CR L V + H YPD ERQ
Sbjct: 202 QCPTCRFGLPSPVVLEHAKSHSITTFLRDFYPDNWLERQ 240
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 30.7 bits (66), Expect = 0.25
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 159 EAQANENTCVVCF-KNVLYYSIGECDHPVCFEC 254
E +E TC +C+ + L + ECDH C C
Sbjct: 123 EVVHHEGTCEICYDEGCLPFFSAECDHEFCLAC 155
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 30.3 bits (65), Expect = 0.33
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -3
Query: 227 LAN*VVQNVLETNYASILVRLSLRHDCCI 141
LA VVQNVL N +S+LV+ + R+ CI
Sbjct: 312 LAEPVVQNVLWVNTSSVLVQFTNRNSTCI 340
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 29.1 bits (62), Expect = 0.77
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Frame = +3
Query: 117 AFTES*INNTTIMSEAQANENTCVVCFKN---VLYYSIGEC-DHPVCFECSTRMRVLCLQ 284
A+ E IN + A+ E V N +L+ S+GE D + F CS+ +R+L +
Sbjct: 334 AYHEEEINPDNTIYRAKWEEYFGGVILHNAFFILHVSLGEVPDFHLLFHCSSDVRILQVV 393
Query: 285 NECPICRKDLL-----RVVFTDSIHPYKELGNREYPDRLFERQYKIVFCSEDIKNAY 440
NE + + V++ D HP K L ++ +R + KI + +N Y
Sbjct: 394 NESMPIKSEFFILTTESVLWMDIQHPQKPLLEWKH-NRKLDPTLKITVTATFSQNIY 449
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 29.1 bits (62), Expect = 0.77
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +3
Query: 150 IMSEAQANENTCVVCFKNVLYYSIGECDHPVCFEC-STRMRVLCLQNECPICRK 308
+ S + + CV+C + S C H C C + + +CP+CR+
Sbjct: 195 VPSSQRLADYKCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRR 248
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +3
Query: 183 CVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDL 314
C +C + + C H C+EC + L CP CR+ L
Sbjct: 85 CPICTEALQRPFTTHCGHTYCYEC--LLNWLKESKSCPTCRQKL 126
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = +3
Query: 144 TTIMSEAQANENTCVVCFKNVLYYSIGE-----CDHPVCFECSTRMR 269
TT ++ AN C +CF LYY C P+C EC +R
Sbjct: 138 TTAITTIYANAMECPICF---LYYPSNFNYTRCCAQPICSECFVEIR 181
>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Frame = +3
Query: 72 ASTYSQFNKTLGYRNAFTES*INNTTIMSEA--QANENTCVVCFKNVLYYSIGECDHPVC 245
A+ F++ G+R NN + ++TC +C + +C+ VC
Sbjct: 45 AAVKEAFSENRGFRTCHVCHRKNNMRLKVGTCESCKKHTCAICIRQC-----HKCESNVC 99
Query: 246 FECSTRMRVLCLQNECPIC 302
CS + R + CP C
Sbjct: 100 SMCSKQERTFESEAFCPSC 118
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = +3
Query: 174 ENTCVVCFKNVLYYS----IGECDHPVCFECSTRMRVLCLQNECPICR 305
+ C+VC N + +C+H EC + + QN CP+CR
Sbjct: 522 DERCLVCLSNFELNDECRRLKQCNHFFHRECIDQW-LTSSQNSCPLCR 568
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Frame = -1
Query: 526 LLM*SFSKLKLRNGGILSQILHRFSN------KFSYAFFMSSEQN 410
+L+ + L NGGI+ Q+L SN KF+ FF++ + N
Sbjct: 79 VLISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQPN 123
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = +3
Query: 225 ECDHPVCFECSTRMRVLCLQNECPICR 305
+C H C+ C L CPIC+
Sbjct: 212 DCGHTYCYACIMSRLKLVNNVSCPICK 238
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 333 DSIHPYKELGNREYPDRLFERQYKIVF---CSEDIKNAYENLLENRCKICDKI 482
+++ YK Y DRLF++ VF +KNA +++LE+ K D I
Sbjct: 193 ENLDEYKSQAKSYYFDRLFDQNINKVFDVVPVTQVKNAPDDVLEDLFKNYDFI 245
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 25.4 bits (53), Expect = 9.5
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -3
Query: 434 IFYVFRTEYNFVLSFKQSIRVFPVPKLLVGMN-RISKYNPQ*IFTTYRTLILKTEHPHPS 258
I F+T+ + + +F V +VG + Y P+ F T++ + + PS
Sbjct: 338 ILIAFKTDSHKSTYIVDFVSLFEVLDEMVGKTIELHVYRPKRGFLTFQLTVQDLHNVTPS 397
Query: 257 RALETYGMV 231
R LE G V
Sbjct: 398 RFLEVGGAV 406
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -1
Query: 514 SFSKLKLRNGGILSQILHRFSNKFSYAFFMSSE 416
SFSK L I+S +HRF++KF F+S E
Sbjct: 1545 SFSKTLLGFVAIIS--IHRFAHKFFIICFLSRE 1575
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = +3
Query: 408 VFCSEDIKNAYENLLENRCKICDKIPPFR-NFSLLNDHMR----RVHERFFCDLCVNHLK 572
V S D + + E L + ++C K R +F++ D ++ ++F C+N +K
Sbjct: 3893 VLFSLDAEISLEKLQNSWKRLCQKNAILRTHFAISEDSSEPMVIQIVDKFEARSCLNQIK 3952
Query: 573 ILPMKEGVIHD 605
ILP + I D
Sbjct: 3953 ILPSRFTNIED 3963
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 19 VLTSRCSSKWYLSKTNSELPRTRNL 93
++ + + W+LSKT+ E+ R R L
Sbjct: 239 IIPNDITKAWFLSKTHQEMMRKRQL 263
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 285 NECPICRKDLLRVVFTDSIHPYKELGNREYPDRLFERQYKIVFCSEDIKNAYENLLENRC 464
N CP+CR + L+V D + K R YP + E+ + E ++ E RC
Sbjct: 73 NTCPLCRTEFLKV---DVLEFVKGPWYRAYP--VEEKTQSVANAGEPFED--EGSETCRC 125
Query: 465 KICDK 479
IC +
Sbjct: 126 VICGR 130
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 311 IFTTYRTLILKTEHPHPSRALETYGM 234
+F YR L+ PH +RAL+ +G+
Sbjct: 57 LFPKYREKYLREVWPHVTRALDKFGI 82
>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 624
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 426 IKNAYENLLENRCKICDKIPPFRNFSLLNDHMRRVHERF 542
I +E L E++ I P++NF+ N ++ ERF
Sbjct: 345 IHKVFEKLSEDQNDIAPYPNPYQNFTTTNTTVKNPFERF 383
>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 508
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 561 NHLKILPMKEGVIHDKNWHIIDVKVTLMIPHTG 659
NH K+ KE ++ + W + V L IP+ G
Sbjct: 276 NHFKLYQFKETMLDIRTWIMFVSSVLLNIPNGG 308
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,241,790
Number of Sequences: 5004
Number of extensions: 68415
Number of successful extensions: 222
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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