Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_O02
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.8  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   7.6  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 212 VQNVLETNYASILVRLSLRHDCCIVYLGFCKSVS 111
           VQ V++  YA  L   +L+ D C    G C S++
Sbjct: 330 VQFVVDAVYAFALALHNLQKDVCSKLKGLCPSMA 363


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 212 VQNVLETNYASILVRLSLRHDCCIVYLGFCKSVS 111
           VQ V++  YA  L   +L+ D C    G C S++
Sbjct: 420 VQFVVDAVYAFALALHNLQKDVCSKLKGLCPSMA 453


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 716 GYNSSDPXFVXHRIHKVDGPCVRYH 642
           GY  S       R+H    PCVRY+
Sbjct: 700 GYLHSVVSGALDRLHYETDPCVRYY 724


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = +1

Query: 61  TNSELPRTRNLIKHSV 108
           +N+EL RT+ L+K+++
Sbjct: 86  SNNELVRTKTLVKNAI 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,891
Number of Sequences: 438
Number of extensions: 4453
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)