Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_O01
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   7.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.2  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   7.2  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   9.5  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
 Frame = +2

Query: 233 LYSHW---RDVFEH---VRSTAKKKHYADQNTSSGTPQERECSIRK 352
           +YS+W   + V  H   +R  AKK + A   +S       EC + K
Sbjct: 233 IYSYWFIIQAVAAHEKNMREQAKKMNVASLRSSENQNTSAECKLAK 278


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 561 TDPLLRSKFHLRFALALISCNSLLR 487
           ++  + SKF L F   L+S N LLR
Sbjct: 216 SESTIDSKFGLGFTTDLLSYNILLR 240


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
 Frame = +2

Query: 233 LYSHW---RDVFEH---VRSTAKKKHYADQNTSSGTPQERECSIRK 352
           +YS+W   + V  H   +R  AKK + A   +S       EC + K
Sbjct: 109 IYSYWFIIQAVAAHEKNMREQAKKMNVASLRSSENQNTSAECKLAK 154


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 284 KKHYADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSH 397
           K+H+ D++  S T    E   R+     S+T+ + L H
Sbjct: 22  KRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQH 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,012
Number of Sequences: 438
Number of extensions: 3641
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)