Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_N04
(807 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 31 0.25
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.59
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 28 1.8
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 27 3.1
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 27 3.1
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 26 7.2
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 7.2
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 9.6
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom... 25 9.6
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 25 9.6
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 30.7 bits (66), Expect = 0.25
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Frame = -2
Query: 284 PPRSNYTFAGAPFP-------PRAKVATPPVIGSERLRLQVPGWRPGEQARRLEGDGAVS 126
PP SNY A P+ P++ A PP S R R+ P + PG + G
Sbjct: 98 PPSSNYNTAKPPYQTSQFYARPQSSYAPPP---SGRPRISYP-YPPGYMCYKCHNTGYKD 153
Query: 125 SDRPDRDRALRTSQRRDVTLKEP 57
S RP A R + DV P
Sbjct: 154 SGRPCGRCARRFGRSYDVQFSRP 176
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.59
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -2
Query: 299 PPRVEPPRSNYTFAGAPFPPRAKVATPP 216
PP PPRSN P PP+ + A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 27.9 bits (59), Expect = 1.8
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 434 AYRPWLFRPVLAQDSRKGTDGAVPPL 511
A+ PW +R LAQ + + +PP+
Sbjct: 425 AFEPWYYRKCLAQGGKPDPEARLPPM 450
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 493 VGSLPAILCKYRPKQPWPVSICVSRKVRHPRSRP 392
+ S P L K+R + P IC RKV+ R +P
Sbjct: 1 MSSSPPALKKFRKRSPKSCLICRRRKVKCDRQQP 34
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 27.1 bits (57), Expect = 3.1
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 115 GRSEDTAPSPSRRRACSPGRHPGTWR-RRRSLPITGGVATFALGGKGAPAKV*FERGGST 291
G+ D P PS R C H G+ + + +TGG + G G A V F R GS
Sbjct: 14 GKHADLDPEPSLLRYCDGRVHVGSGKLAEKKTLLTGGDS-----GIGKAAAVMFAREGSD 68
Query: 292 LGGPC 306
L C
Sbjct: 69 LVISC 73
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 685 SQKSSIAFQDASLPSXVATTRGSERSSPMTATRAARCSSNPEQRA 551
S + ++AFQ L ++ R + S+P T R++ NP +RA
Sbjct: 218 SPEDTVAFQSVELQKVISNNRLNSSSTPPT-PRSSSSIFNPFRRA 261
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.8 bits (54), Expect = 7.2
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Frame = -2
Query: 422 PEGEASAVAAH--PVRENRADRLDGSEAGR---RVRQAARPRLQHGP--PRVEPPRSNYT 264
P AS + ++ PV E + + +G R RQ R R P PRV P Y
Sbjct: 211 PASAASEIISNKDPVVEPTHSASNAANSGSNTIRARQTTRTRSNTLPWSPRVFGPTLGYN 270
Query: 263 FAGAPFPPRAKVATPPVIGS 204
+PP A P GS
Sbjct: 271 TPPFGYPPTTSSALPNASGS 290
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -2
Query: 389 PVRENRADRLDGSEAGRRVRQAARPRLQHGPPRVEPPRSNYTFAGAPFPP 240
P+ +++ D D Q P++Q R EP SN+ + PFPP
Sbjct: 117 PLSDSQLDTGDSPATSETTVQDYNPQVQ-SYCRPEPLSSNHVRSCPPFPP 165
>SPCC330.10 |pcm1||mRNA capping
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 389
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -3
Query: 409 HPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTD 299
H PT++ R R + + R + +RRD+ + D
Sbjct: 38 HEEQPPTENRRYARPTAQMNRVIEQQPRRRDYFQNND 74
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 91 VRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRRSLPI 213
VRS+ S S S+DT PS G + T R R+L +
Sbjct: 326 VRSSLSSSSLSKDTEPSTVDMHIAFTGLNKPTIERERNLKL 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,368
Number of Sequences: 5004
Number of extensions: 41614
Number of successful extensions: 169
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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