Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_N03
(941 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 0.16
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.24
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.95
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.7
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 27 3.8
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 26 6.7
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 6.7
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect(2) = 0.16
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +3
Query: 507 PPPXNXPXXXXXXXXXXXXXXXFPPPPPPP 596
PPP P PPPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196
Score = 24.6 bits (51), Expect(2) = 0.16
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +3
Query: 576 PPPPPPPXXXXPP 614
P PPPPP PP
Sbjct: 236 PAPPPPPPPTLPP 248
Score = 22.6 bits (46), Expect(2) = 6.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 312 PKIPQKIXXPFXPPPP*TPP 371
PK + P PPPP PP
Sbjct: 229 PKQADPLPAPPPPPPPTLPP 248
Score = 21.8 bits (44), Expect(2) = 6.0
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +3
Query: 348 PPPP*TPPXGXXPP 389
PPPP TP PP
Sbjct: 273 PPPPATPSQPPRPP 286
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.24
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = +3
Query: 474 PPPPXXXXXGGPPPXNXPXXXXXXXXXXXXXXXFPPPPPPP 596
P PP GGPPP P PPPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPP-------PPPPPPP 783
Score = 27.5 bits (58), Expect = 2.9
Identities = 16/51 (31%), Positives = 16/51 (31%)
Frame = +3
Query: 465 KXXPPPPXXXXXGGPPPXNXPXXXXXXXXXXXXXXXFPPPPPPPXXXXPPP 617
K PPPP P P P PPPPP PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP---PPPPPGVAGAGPPP 777
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.95
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = +3
Query: 459 KKKXXPPPPXXXXXGGPPPXNXPXXXXXXXXXXXXXXXFPPPPPPP 596
KK+ PPPP G PP PPPPPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIG----------NGSSNSSLPPPPPPP 343
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 2.2
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +3
Query: 576 PPPPPPPXXXXPP 614
PPPPPPP PP
Sbjct: 9 PPPPPPPPGFEPP 21
Score = 24.2 bits (50), Expect(2) = 1.6
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 339 PFXPPPP*TPPXGXXPP 389
P PPPP PP G PP
Sbjct: 6 PGNPPPP-PPPPGFEPP 21
Score = 22.2 bits (45), Expect(2) = 1.6
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = +3
Query: 474 PPPPXXXXXGGPPPXNXP 527
PPPP PPP P
Sbjct: 13 PPPPGFEPPSQPPPPPPP 30
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 583 PPPPPXXXPPPP 618
PPPPP PPPP
Sbjct: 1707 PPPPPMSVPPPP 1718
Score = 27.5 bits (58), Expect = 2.9
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 576 PPPPPPPXXXXPPP 617
P PPPPP PPP
Sbjct: 1705 PTPPPPPMSVPPPP 1718
>SPAC23D3.12 |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 30 RRHWLGLTLGSFKKV*GTAG 89
RRHWLGLT FK + G AG
Sbjct: 32 RRHWLGLTKREFKLM-GFAG 50
>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +2
Query: 443 PXXXXKKKXXXPPPXFXXXGGAPPXKXPXFFFFXGGG 553
P K P F G AP P F +F GGG
Sbjct: 74 PRKHTKAPSGVPSRIFRPHGTAPEGGWPCFLWFHGGG 110
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.2 bits (55), Expect = 6.7
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 573 FPPPPPPP 596
FPPPPPPP
Sbjct: 944 FPPPPPPP 951
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.149 0.512
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,051,913
Number of Sequences: 5004
Number of extensions: 31998
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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