Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_M23
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1474 - 27365548-27366054 35 0.098
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 34 0.17
07_01_0373 + 2783596-2784933 33 0.30
08_02_1615 + 28257275-28258428,28258523-28259144 31 0.91
03_06_0239 - 32578231-32578353,32578431-32578655,32579081-325792... 29 3.7
02_04_0452 + 23044190-23045227 29 3.7
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.7
09_02_0252 - 6315834-6315959,6316074-6317018 29 4.9
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 29 4.9
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 29 6.4
05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335 29 6.4
04_01_0041 - 464695-464850,467485-469029 29 6.4
01_05_0227 - 19512866-19514983 29 6.4
07_01_0312 + 2214050-2214556 28 8.5
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 8.5
>08_02_1474 - 27365548-27366054
Length = 168
Score = 34.7 bits (76), Expect = 0.098
Identities = 21/52 (40%), Positives = 24/52 (46%)
Frame = -1
Query: 632 QGIDGNGCKSGVVGVWNRGFDDRVDVAEIAGEGGLMHKGETANSNARG*RGG 477
Q +DG G G VGVW R D AG G + +G A RG RGG
Sbjct: 73 QRVDGMGALCGEVGVWRRKIGDSRRSGGAAGGGAAVGRG--AAVGGRGARGG 122
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 33.9 bits (74), Expect = 0.17
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +1
Query: 544 AISATSTRSSNPRFHTPTTPDLHPFPSIP*RRIXGVAPGLSSCLKSQXTLG 696
A S+T+TR S PR H PTTP P +P RR +P ++ L++ T+G
Sbjct: 2 AASSTATRLSPPRLHAPTTPS----PHLPLRR-SRFSPLRAAKLEAVLTIG 47
>07_01_0373 + 2783596-2784933
Length = 445
Score = 33.1 bits (72), Expect = 0.30
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = -2
Query: 91 EEEKALTKEGMAEAAETXKGTISSMNRSSS 2
E+++ LTK G + +ET KG++ S++RS S
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRSES 180
>08_02_1615 + 28257275-28258428,28258523-28259144
Length = 591
Score = 31.5 bits (68), Expect = 0.91
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +1
Query: 532 PPSPA-ISATSTRSSNPRFHTPTT--PDLHPFPSIP*RRIXGVAPGLSSCLKSQXTLG 696
PP PA ++ +S P H TT P P P P R++ A GL L + TLG
Sbjct: 59 PPPPAPLTPPPPKSPPPPPHIQTTDLPPPKPLPPAPLRQLFSFADGLDYVLMTLGTLG 116
>03_06_0239 -
32578231-32578353,32578431-32578655,32579081-32579248,
32579331-32579446,32579540-32579692,32579779-32579922,
32580775-32581576
Length = 576
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 506 WRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQTYIHFHQS 628
WR RP ++ P L P Q P+ + PP + H S
Sbjct: 23 WRPRPADAAPPALPPPSSAPSDQAPEPVTIPPSEHSSHHSS 63
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 479 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPP 601
H +L H+ +A SH SR H P + P S PP
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPTSAPPPP 206
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.7
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 282 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 455
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 456 VEGVNVLATPSSSRITIGGLALMHQ 530
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>09_02_0252 - 6315834-6315959,6316074-6317018
Length = 356
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Frame = +1
Query: 532 PPSPAISATSTRSSNPRFHTP--TTP---DLHPFPSIP 630
P SP +S +S+R+ +PR H P TP + HP P P
Sbjct: 46 PSSPRLSTSSSRTPSPRAHRPRAATPFANENHPPPPPP 83
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 532 PPSPAISATSTRSSNPRFHTPTTPDLHPFPS 624
PPSP+I + T +TPT D P PS
Sbjct: 105 PPSPSIGTSPTTPGGGGGYTPTPSDTPPSPS 135
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 28.7 bits (61), Expect = 6.4
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +1
Query: 535 PSPAISATSTRSSNPRFHTPTTPDLHPFPSIP*RRIXG---VAPGLSSCLKSQXTLGVGP 705
P A+ AT+T + TP TP+ +P P++P + VAP + S S LG P
Sbjct: 26 PPLAVPATNTPPNPATTPTPLTPNPNPSPTLPPPPMSTPPVVAPPMHSFAPSFRPLGAPP 85
>05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335
Length = 377
Score = 28.7 bits (61), Expect = 6.4
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 564 PIIKSPIPYTNHPRLTSISINPLTPYXRS 650
P + SP+ HP+L ++++ P +P+ RS
Sbjct: 66 PTVPSPLHVGCHPQLLTVTLRPPSPHTRS 94
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 243 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 419
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 420 TVD 428
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 460 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 368
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>07_01_0312 + 2214050-2214556
Length = 168
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +1
Query: 532 PPSPAISATSTRSSNPRFHTPTTPD--LHPFPSIP 630
PP PAI A + P PT P+ L P P++P
Sbjct: 51 PPMPAIPAVPAATLPPMPAVPTVPNAALPPMPAVP 85
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 8.5
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +3
Query: 234 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 413
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 414 PVTVDLCWTTADVTVEGVNVLATPSS 491
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,338,892
Number of Sequences: 37544
Number of extensions: 439448
Number of successful extensions: 1447
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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