Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_M19
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.028
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   3.2  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   5.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.8  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   9.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.028
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = +2

Query: 449 PGPPXFXXXGXPXGPPPPPXXXXXGVXXXXPPXPXXXXXGPSXXXP 586
           P PP     G P  PPPPP     G     PP P     G     P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = +2

Query: 449 PGPPXFXXXGXPXGPPPPPXXXXXGVXXXXPPXPXXXXXGPSXXXPP 589
           P P        P   P PP     G     PP P     GP    PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +2

Query: 449 PGPPXFXXXGXPXGPPPPPXXXXXGVXXXXPPXP 550
           P PP       P  PPPPP     G      P P
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/60 (30%), Positives = 18/60 (30%)
 Frame = +2

Query: 410 PXXPXFXXXGXXFPGPPXFXXXGXPXGPPPPPXXXXXGVXXXXPPXPXXXXXGPSXXXPP 589
           P  P     G   P PP     G     PPPP     G     PP P     G     PP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHM--PPPPMHHEPG--EHMPPPPMHHEPGEHMPPPP 263



 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/60 (30%), Positives = 18/60 (30%)
 Frame = +2

Query: 410 PXXPXFXXXGXXFPGPPXFXXXGXPXGPPPPPXXXXXGVXXXXPPXPXXXXXGPSXXXPP 589
           P  P     G   P PP     G     PPPP     G     PP P     G     PP
Sbjct: 247 PPPPMHHEPGEHMPPPPMHHEPGEHM--PPPPMHHEPG--EHMPPPPMHHEPGEHMPPPP 302



 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/60 (30%), Positives = 18/60 (30%)
 Frame = +2

Query: 410 PXXPXFXXXGXXFPGPPXFXXXGXPXGPPPPPXXXXXGVXXXXPPXPXXXXXGPSXXXPP 589
           P  P     G   P PP     G     PPPP     G     PP P     G     PP
Sbjct: 286 PPPPMHHEPGEHMPPPPMHHEPGEHM--PPPPMHHEPG--EHMPPPPMHHEPGEHMPPPP 341


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 85  NASRFCVSSLRRGHAN 38
           +ASRFCV SL+R  AN
Sbjct: 579 SASRFCVESLKRQKAN 594


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = -3

Query: 585 GXXXXGPXXXXXGXGGXXXXTPXXXXXGGGGGPXGXPXXXXXGGPG 448
           G    GP     G GG           GG GG  G P     GGPG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGP-GGFEGGPG 238


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 158 EFYSRIRSPRGVYEGAVRIVCQNVERF 78
           +F+   RSP+ VY+G  R V  N ERF
Sbjct: 523 DFFLPSRSPKLVYQGIYRYV-NNPERF 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,061,697
Number of Sequences: 5004
Number of extensions: 32942
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)