Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_M19
(821 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 33 0.36
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 33 0.36
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 31 1.5
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 1.9
07_03_1136 + 24218601-24218734,24218769-24219906 29 3.4
12_01_0526 - 4171313-4171417,4171514-4171597,4171688-4171758,417... 29 4.5
02_05_0686 - 30900748-30902167,30903442-30904742 29 5.9
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 24 6.7
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 28 7.8
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 28 7.8
07_03_0890 - 22332768-22333382 28 7.8
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 32.7 bits (71), Expect = 0.36
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = +2
Query: 449 PGPPXFXXXGXPXGPPPPPXXXXXGVXXXXPPXPXXXXXGPSXXXPP 589
P PP P PPPPP V PP P P+ PP
Sbjct: 607 PPPPILPNRSVPPPPPPPPPLPNHSVLPPPPPPPPPPSL-PNRLVPP 652
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = +2
Query: 449 PGPPXFXXXGXPXGPPPPPXXXXXGVXXXXPPXPXXXXXGPSXXXPP 589
P PP P PPPPP PP P P+ PP
Sbjct: 623 PPPPLPNHSVLPPPPPPPPPPSLPNRLVPPPPAPGIGNKFPAPPPPP 669
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = +2
Query: 482 PXGPPPPPXXXXXGVXXXXPPXPXXXXXGPSXXXPP 589
P PPPPP G PP P + PP
Sbjct: 713 PPPPPPPPANRSNGPSAPAPPLPPPLPAAANKRNPP 748
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 32.7 bits (71), Expect = 0.36
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = +2
Query: 449 PGPPXFXXXGXPXGPPPPPXXXXXGVXXXXPPXPXXXXXGPSXXXPP 589
P PP G PP PP G+ PP P GP PP
Sbjct: 1122 PPPPPIGGLGGHQAPPAPPLPE--GIGGVPPPPPVGGLGGPPAPPPP 1166
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/44 (31%), Positives = 15/44 (34%)
Frame = +2
Query: 455 PPXFXXXGXPXGPPPPPXXXXXGVXXXXPPXPXXXXXGPSXXXP 586
PP P PPPPP G+ PP P P P
Sbjct: 268 PPPQVPPPPPQAPPPPPPNAPMGMPPRIPPPPVGGTQPPPPPPP 311
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = +2
Query: 449 PGPPXFXXXGXPXGPPPPPXXXXXGVXXXXPPXPXXXXXGPSXXXPP 589
P PP P PPPPP PP P + PP
Sbjct: 95 PPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPPPPTQPPPREAQLAPP 141
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/51 (33%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Frame = +2
Query: 449 PGPPXFXXXGXPXG----PPPPPXXXXXGVXXXXPPXPXXXXXGPSXXXPP 589
PGPP P PPPPP PP P PS PP
Sbjct: 74 PGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPP 124
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/57 (29%), Positives = 17/57 (29%)
Frame = -3
Query: 588 GGXXXXGPXXXXXGXGGXXXXTPXXXXXGGGGGPXGXPXXXXXGGPGXXSPXXXXXG 418
GG GP G GG P GGGGG GG P G
Sbjct: 110 GGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGGRG 166
>12_01_0526 -
4171313-4171417,4171514-4171597,4171688-4171758,
4171814-4171891,4174482-4174569,4174659-4174850,
4174939-4175802
Length = 493
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 449 PGPPXFXXXGXPXGPPPPPXXXXXGVXXXXPPXP 550
P PP P PPPPP V PP P
Sbjct: 148 PPPPPPQESTPPPPPPPPPAPVAAAVSAPAPPSP 181
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/47 (34%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Frame = +2
Query: 455 PPXFXXXGXPXGPP---PPPXXXXXGVXXXXPPXPXXXXXGPSXXXP 586
PP G P PP PPP G PP P GP P
Sbjct: 336 PPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPP 382
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 24.2 bits (50), Expect(2) = 6.7
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +2
Query: 449 PGPPXFXXXGXPXGPPPPP 505
P P G P PPPPP
Sbjct: 115 PPPHLLHYYGHPPPPPPPP 133
Score = 22.6 bits (46), Expect(2) = 6.7
Identities = 9/21 (42%), Positives = 9/21 (42%)
Frame = +2
Query: 488 GPPPPPXXXXXGVXXXXPPXP 550
GPPPPP V P P
Sbjct: 152 GPPPPPDHVLKKVPSHPSPPP 172
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = +2
Query: 449 PG-PPXFXXXGXPXGPPPPP 505
PG PP G P GPPPPP
Sbjct: 621 PGAPPPPPPPGKPGGPPPPP 640
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = +2
Query: 449 PG-PPXFXXXGXPXGPPPPP 505
PG PP G P GPPPPP
Sbjct: 926 PGAPPPPPPPGKPGGPPPPP 945
>07_03_0890 - 22332768-22333382
Length = 204
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/47 (29%), Positives = 15/47 (31%)
Frame = +2
Query: 449 PGPPXFXXXGXPXGPPPPPXXXXXGVXXXXPPXPXXXXXGPSXXXPP 589
P PP P PPPPP PP P P+ P
Sbjct: 75 PPPPPAEATPPPPPPPPPPERAVPEAADTPPPPPPPTAPTPTPPELP 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,796,741
Number of Sequences: 37544
Number of extensions: 375262
Number of successful extensions: 1548
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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