Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_M14
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.089
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.36 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.82 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.1  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    27   3.3  
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar...    26   5.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   7.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.089
 Identities = 18/56 (32%), Positives = 19/56 (33%)
 Frame = +2

Query: 647 RXPXPQPPXXXXPXPPXXXXPXXXXXFXGXPRPPXXXPPXFPPPPXFXXKKKXPPP 814
           + P P PP    P P     P         P P    PP  PPPP        PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPP------PAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 746 PXXXPPXFPPPPXFXXKKKXPPPRGXG 826
           P   PP  PPPP F    + PPP   G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
 Frame = +2

Query: 737 PRPPXXXPPXF---PPPPXFXXKKKXPPPRGXG 826
           P PP   PP     PPPP +  K+K   P   G
Sbjct: 13  PPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSG 45


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 18/64 (28%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
 Frame = +2

Query: 653 PXPQPPXXXXPXPPXXXXPXXXXXFXGXPRPPXXXP--PXFPPPPXFXXKKKXPPPRGXG 826
           P P PP      PP            G P  P   P  P  PP P         PP    
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPA 475

Query: 827 XPPS 838
            PP+
Sbjct: 476 PPPA 479


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 22/69 (31%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
 Frame = +2

Query: 653  PXPQPPXXXXPXPPXXXXPXXXXXFXGXP--RPPXXXPPXFPP----PPXFXXKKKXPP- 811
            P P+P     P PP    P       G P   PP   PP   P    PP      K PP 
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPV 1239

Query: 812  PRGXGXPPS 838
            P      PS
Sbjct: 1240 PAPSSEAPS 1248



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/66 (24%), Positives = 18/66 (27%)
 Frame = +2

Query: 638  PXDRXPXPQPPXXXXPXPPXXXXPXXXXXFXGXPRPPXXXPPXFPPPPXFXXKKKXPPPR 817
            P +  P P+P     P PP    P       G P  P       P P           PR
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPR 1253

Query: 818  GXGXPP 835
                 P
Sbjct: 1254 SSVPSP 1259



 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/66 (25%), Positives = 18/66 (27%)
 Frame = +2

Query: 638  PXDRXPXPQPPXXXXPXPPXXXXPXXXXXFXGXPRPPXXXPPXFPPPPXFXXKKKXPPPR 817
            P    P P+P     P P     P           PP   P   PP P         P  
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKP--SVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174

Query: 818  GXGXPP 835
              G PP
Sbjct: 1175 SSGIPP 1180


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 81  ANQASPFDKKHGQHSSTSDEIDKSFDKE 164
           +++ASPF+K +  HS  S     S D+E
Sbjct: 408 SSKASPFNKPNSVHSEASRNTPSSIDRE 435


>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 289

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 102 DKKHGQHSSTSDEIDKSFDKEYERERRRQP 191
           D K+ +  +T +E + + D EY R   R+P
Sbjct: 55  DYKYDESRATQEETETNLDDEYHRLGEREP 84


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/60 (26%), Positives = 16/60 (26%)
 Frame = +2

Query: 659  PQPPXXXXPXPPXXXXPXXXXXFXGXPRPPXXXPPXFPPPPXFXXKKKXPPPRGXGXPPS 838
            P  P    P  P    P         P P    PP   PP         PPP      PS
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/51 (33%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
 Frame = -1

Query: 773 GGXXGGXXXGXGGXPXKXRXXXGXXXXGG---RXXXGXGVGVGXXGXXGXP 630
           GG  GG   G GG P       G    GG         G G G  G  G P
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGP 237


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 93  SPFDKKHGQHSSTSDEIDKSFDKEYERERRRQPVP 197
           S FD    + S  +D +D+ F K+YE E +    P
Sbjct: 442 SIFDSFVNKFSELNDSLDQFFKKKYEEEIKETKSP 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,819,153
Number of Sequences: 5004
Number of extensions: 29430
Number of successful extensions: 128
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)