Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_M09
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1140 + 34386042-34386302,34386738-34386917,34386999-343870... 44 1e-04
04_03_0562 + 17190443-17190520,17190715-17190853,17190943-171910... 42 5e-04
04_03_0559 + 17118319-17118396,17119329-17119467,17119569-171196... 40 0.003
04_03_0566 + 17209455-17209565,17210159-17210203,17211456-172115... 38 0.008
01_06_0737 + 31592562-31592786,31593314-31593541,31593981-315940... 37 0.024
09_04_0641 + 19172370-19172459,19172539-19172680,19172951-191730... 36 0.042
09_04_0636 + 19150966-19151037,19151150-19151291,19151404-191514... 33 0.39
08_01_0065 + 452383-452629,452733-452868,453049-453118,453237-45... 32 0.51
03_01_0012 - 101584-101898,102274-102531,102932-103474 31 1.6
10_07_0124 - 13085820-13085997,13086235-13086362,13086475-130865... 30 2.7
10_08_0923 + 21597593-21597629,21598089-21598135,21598253-215983... 29 6.3
07_01_0450 - 3395644-3395837,3396164-3396190,3396266-3396396,339... 28 8.3
04_03_0629 + 18179065-18179148,18180146-18180287,18180987-181810... 28 8.3
>02_05_1140 +
34386042-34386302,34386738-34386917,34386999-34387080,
34387180-34387287,34387442-34387630,34387814-34388010
Length = 338
Score = 44.4 bits (100), Expect = 1e-04
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +3
Query: 252 MRAVVLTGFGGLKTVKILKKPE--PTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPP 416
MRAVV+ GG + ++ E P GEGEVL+ V A G+N D + RQG +PP
Sbjct: 1 MRAVVIARAGGPEVLEERDVGEGLPPPGEGEVLVGVSAAGVNRADTVQRQGRYPAPP 57
>04_03_0562 +
17190443-17190520,17190715-17190853,17190943-17191034,
17191681-17191989,17192817-17193506
Length = 435
Score = 42.3 bits (95), Expect = 5e-04
Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +3
Query: 252 MRAVVLTGFGG-LKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQG 398
MRAV +G+GG +K ++ P P+V + EVL++V+A +N DL+ ++G
Sbjct: 10 MRAVQYSGYGGGAAALKFVEIPVPSVKKDEVLVKVEAASINQSDLMTQKG 59
>04_03_0559 +
17118319-17118396,17119329-17119467,17119569-17119660,
17119974-17120660
Length = 331
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +3
Query: 252 MRAVVLTGFGG-LKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQG 398
MRAV G+GG T+K ++ P P++ + E+LI+++A LN D +++G
Sbjct: 10 MRAVQYGGYGGGAATLKFVEIPVPSLKKNEILIKIEAASLNQADWRIQKG 59
>04_03_0566 +
17209455-17209565,17210159-17210203,17211456-17211569,
17211943-17212081,17212324-17212415,17213245-17213517
Length = 257
Score = 38.3 bits (85), Expect = 0.008
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +3
Query: 252 MRAVVLTGFGG-LKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAI 404
MRAV TG+GG +K ++ P P+V + EVLI+V+A +N D +++G +
Sbjct: 74 MRAVQYTGYGGGAGALKHVEIPVPSVKKHEVLIKVEAASVNPIDWSIQKGML 125
>01_06_0737 +
31592562-31592786,31593314-31593541,31593981-31594054,
31594595-31594754,31595979-31596098,31596185-31596293,
31597447-31597628
Length = 365
Score = 36.7 bits (81), Expect = 0.024
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +3
Query: 255 RAVVLTGFGGLKTVKILKK-PEPTVGEGEVLIRVKACGLNFQDLIVRQG 398
RAVV+ FGG + +++ + P P + G+VL+R +A +N DL +R G
Sbjct: 31 RAVVVPRFGGPEVLEVRQGVPVPDLKPGDVLVRARAVSINPLDLRMRSG 79
>09_04_0641 +
19172370-19172459,19172539-19172680,19172951-19173039,
19173096-19173806
Length = 343
Score = 35.9 bits (79), Expect = 0.042
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +3
Query: 252 MRAVVLTGFGG-LKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAI 404
MRAV G+GG + +K ++ P P+ +GEVLI+++A +N D +++G +
Sbjct: 14 MRAVQYDGYGGGAEGLKHVEVPIPSPKKGEVLIKMEAASINPIDWKIQKGML 65
>09_04_0636 +
19150966-19151037,19151150-19151291,19151404-19151492,
19151589-19152308
Length = 340
Score = 32.7 bits (71), Expect = 0.39
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +3
Query: 252 MRAVVLTGFGG-LKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQG 398
MRAV +GG + +K ++ P PT +GEVLI+++A +N D ++G
Sbjct: 8 MRAVQYDKYGGGAQALKHVEVPIPTPKKGEVLIKMEAGSINQVDWKFQKG 57
>08_01_0065 +
452383-452629,452733-452868,453049-453118,453237-453330,
453426-453639,453756-453897,454076-454246,454586-454780
Length = 422
Score = 32.3 bits (70), Expect = 0.51
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 252 MRAVVLTGFGGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAI 404
MR V G T++ + P P GE +LI+ KACG+ DL V +G +
Sbjct: 50 MRGAVFWEPGRPLTLEDFRMPRPKAGE--LLIKTKACGVCHSDLHVLKGEL 98
>03_01_0012 - 101584-101898,102274-102531,102932-103474
Length = 371
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 330 EGEVLIRVKACGLNFQDLIVRQGAIDSP 413
EGE+ I+ A G+NF D+ RQG +P
Sbjct: 73 EGEIRIKNTAIGVNFIDVYYRQGVYSAP 100
>10_07_0124 -
13085820-13085997,13086235-13086362,13086475-13086550,
13086726-13086803,13086985-13087064,13087411-13087480,
13087730-13087887,13088225-13088315,13088379-13088455,
13088612-13088686,13088798-13089071,13089911-13090041,
13090154-13090323,13090413-13090971,13091077-13091127
Length = 731
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 440 GVDIVLDCLCGEECNRGYSL 499
G+D + DC CG+E RG SL
Sbjct: 134 GIDPIFDCSCGQEVLRGISL 153
>10_08_0923 +
21597593-21597629,21598089-21598135,21598253-21598391,
21598449-21598562,21599206-21599432,21599578-21599835,
21600014-21600304,21600766-21600830,21601116-21601299,
21601857-21601964
Length = 489
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 330 EGEVLIRVKACGLNFQDLIVRQGAIDSP 413
EGE+ I+ KA G+N+ D+ R G P
Sbjct: 42 EGEIRIKNKAIGVNYVDIYYRTGLHQEP 69
>07_01_0450 -
3395644-3395837,3396164-3396190,3396266-3396396,
3396612-3396691,3397283-3397345,3397588-3397697,
3398316-3398424,3398783-3398857,3399363-3399459,
3399622-3399683,3399966-3400026,3400330-3400469,
3400747-3400839,3401345-3401393,3401534-3401634,
3401723-3401816,3401904-3402139
Length = 573
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 38 RFSRSGLHLQP-NATRLDPPAPYHQN 112
R SRS L P ++ RL PPAPYH +
Sbjct: 10 RLSRSRRPLLPLSSLRLPPPAPYHHH 35
>04_03_0629 +
18179065-18179148,18180146-18180287,18180987-18181078,
18181272-18181964
Length = 336
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 252 MRAVVLTGFGG-LKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAI 404
MRAV GG +K ++ P P+ + EVL++++A +N D +++G +
Sbjct: 12 MRAVQYDASGGGAAGLKHVEVPVPSAKKNEVLLKLEAATINPVDWKIQKGML 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,728,028
Number of Sequences: 37544
Number of extensions: 473104
Number of successful extensions: 1085
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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