Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_M07
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0667 + 21682386-21682944,21683042-21683201,21683419-216834... 29 3.3
11_01_0022 + 151233-151515,152632-152852,153579-153656,154558-15... 29 4.3
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037... 29 4.3
03_05_0431 + 24221881-24224586 29 5.7
10_08_1037 - 22477358-22478752 28 7.5
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 28 7.5
09_04_0289 + 16424385-16424447,16424678-16424766,16424925-164250... 28 7.5
01_06_0225 - 27675363-27675464,27675727-27675823,27676145-276762... 28 7.5
03_01_0238 + 1854070-1854344,1854621-1854712,1854852-1855045,185... 28 9.9
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850... 28 9.9
>12_02_0667 +
21682386-21682944,21683042-21683201,21683419-21683467,
21683570-21683683,21683794-21684294,21684594-21684980,
21685074-21685172,21685380-21685478,21685817-21685890,
21686387-21687023
Length = 892
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -2
Query: 284 AKESDGANGGGVCAPTTEW---DARSDVRRATPFEE 186
++E G GGG P ++ D+RS RR+T F+E
Sbjct: 3 SREESGNGGGGGATPAADYRSSDSRSSSRRSTRFKE 38
>11_01_0022 +
151233-151515,152632-152852,153579-153656,154558-154674,
155970-156316,156504-157032
Length = 524
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 545 NLKGFQVGAGCVSEHYACIR 486
N +QVG GC+S+ Y C+R
Sbjct: 348 NATNYQVGTGCLSDIYFCLR 367
>04_04_0233 +
23801944-23802598,23802914-23803047,23803548-23803730,
23804145-23804318
Length = 381
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +3
Query: 69 YSCRKMSLLHRRLQIA----VATMGQWFRKWRIDINPTKSAAVLFKRGR 203
+S L+HR L A VA + R WR + P + AA L RGR
Sbjct: 89 FSALPPELVHRALAAAGASDVAAASRACRAWRDALRPLREAAALHARGR 137
>03_05_0431 + 24221881-24224586
Length = 901
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -3
Query: 382 ARSRTVFIWG-RNVIPLSRVTPRYLTFETHGMG 287
AR+RTVF WG +V + + PR + F++ G G
Sbjct: 175 ARNRTVFCWGDESVSGVIGLAPRNVRFQSIGAG 207
>10_08_1037 - 22477358-22478752
Length = 464
Score = 28.3 bits (60), Expect = 7.5
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 2/95 (2%)
Frame = +2
Query: 89 AASSATPDRSSHHGTV-VPEVANRHQPHEKRSGALQKGSPSEHHFEHP-TP**ARKHLRR 262
AA++ TP ++ G E RH P R L P H HP P + +
Sbjct: 204 AAAAVTPAAAAAAGLQHQQEPVPRHSPAAHRGDPLPASPPQPQHQHHPHRPLPPQHQQPK 263
Query: 263 *PHHSLWPAHTVGLEGQISRRHPRQRDDIPSPYKN 367
P L + ++R P IP+P N
Sbjct: 264 PPSMRLQKIRPPPISTPVARPPPVHNHQIPNPNHN 298
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +2
Query: 104 TPDRSSHHGTVVPEVANRHQPHEKRSGALQKGSPSEHHFEHPTP 235
+P RS H P + QP+ S LQ P H +P P
Sbjct: 45 SPSRSFHGYPSAPPPQPQPQPYAHHSAPLQPYPPPPQHHAYPPP 88
>09_04_0289 +
16424385-16424447,16424678-16424766,16424925-16425068,
16425713-16426189,16426320-16426527
Length = 326
Score = 28.3 bits (60), Expect = 7.5
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = -3
Query: 328 VTPRYLTFETHGMGWPK--RVMGLTAEVFARLLRSGMLEVMFGGRPLLKSTAALFVGLMS 155
+TPR +F G+G+ + R+ + E F +G ++ + P + S + L
Sbjct: 150 LTPRETSFLLKGLGFTRSTRIYLVAGEAFG----NGSMQALMDDFPNIYSHSTLATK-EE 204
Query: 154 IRHFRNHCPMVATAIWSRR*SSDIFLH 74
+ FRNH M+A + SD+FL+
Sbjct: 205 LEPFRNHQNMLAGLDYIVALQSDVFLY 231
>01_06_0225 -
27675363-27675464,27675727-27675823,27676145-27676218,
27677361-27677444,27677728-27678489,27679515-27679565
Length = 389
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 290 GLAKESDGANGGGVCAPTTEWDAR 219
G +K DG NGG + AP E D++
Sbjct: 120 GESKPGDGGNGGSISAPQDESDSK 143
>03_01_0238 +
1854070-1854344,1854621-1854712,1854852-1855045,
1855529-1855568,1855734-1855815,1856972-1857049,
1857144-1857269,1857544-1857665,1858018-1858057,
1858250-1858324,1858414-1858585
Length = 431
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = +3
Query: 60 AIYYSCRKMSLLHRRLQIAVATMGQWFRKWRIDINPTKSAAVLFKRGRPPNITSSIPLRS 239
AI CR RRL A A + +WRID N +AA +R S+P S
Sbjct: 32 AIRCCCRAQQEPRRRLSKAAAAAPERTEEWRIDGN-KPAAAARGRRRASLTAMPSLPFPS 90
Query: 240 RRA 248
R+
Sbjct: 91 PRS 93
>02_02_0279 -
8507603-8507620,8508040-8508060,8508613-8508835,
8509204-8509553,8509631-8509729,8509811-8510105,
8510200-8510405,8510498-8510689,8510766-8511163,
8511258-8511444,8511473-8511528,8511800-8511872,
8512012-8512872,8514353-8514778
Length = 1134
Score = 27.9 bits (59), Expect = 9.9
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -1
Query: 189 RAPLRFSWG*CLFATSGTTVP-W-WLLRSGVADEAATSSYTSSR*PCHRRRALDGLRRPG 16
RA + + +G LF SG + W WLL DEA T S+ S+ R+ D RR G
Sbjct: 595 RAYVLYIFGSILFPDSGGDMASWMWLLLLADWDEAGTFSWGSAALAWLYRQLCDACRRQG 654
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,242,118
Number of Sequences: 37544
Number of extensions: 452914
Number of successful extensions: 1291
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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