Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_M02
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   134   2e-32
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   132   5e-32
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.72 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.9  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    26   6.7  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    25   8.9  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  134 bits (323), Expect = 2e-32
 Identities = 61/97 (62%), Positives = 77/97 (79%)
 Frame = +2

Query: 83  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 262
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 263 AIEXPADVFVISSRXFGQRAVLKFAAHTGATPIAGTF 373
            IE PADV VISSR +G RAVLKFAAHTGAT IAG F
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRF 106



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 382 GAFTNXIQAXFREPRXLIGLDP 447
           G FTN I   +REPR +I  DP
Sbjct: 109 GNFTNYITRTYREPRLIIVTDP 130


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  132 bits (319), Expect = 5e-32
 Identities = 58/101 (57%), Positives = 79/101 (78%)
 Frame = +2

Query: 71  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 250
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 251 RAVVAIEXPADVFVISSRXFGQRAVLKFAAHTGATPIAGTF 373
           R +  IE PADV V+S+R +G RAVLKFAAHTGAT IAG F
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRF 105



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 382 GAFTNXIQAXFREPRXLIGLDP 447
           G FTN I   +REPR ++  DP
Sbjct: 108 GNFTNYITRTYREPRLIVVTDP 129


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 629 GGXSPPNPPPXXXGXXXSXPPGPXXKXEGG 718
           GG  PP PPP   G     PP P      G
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 643 PEPPPXXFXXKXFPPPXXPXKXGRGXXPXP 732
           P PPP        PPP  P   G G  P P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 631 GXFPPEPPPXXFXXKXFPPPXXP 699
           G  PP PPP  F     PPP  P
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/46 (34%), Positives = 17/46 (36%)
 Frame = +2

Query: 560 PXFPPPLGXKWGGFGP*XGXGXXGGXSPPNPPPXXXGXXXSXPPGP 697
           P  PPP   +  G  P  G G      PP PPP       S P  P
Sbjct: 311 PPPPPPPSRRNRGKPP-IGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 349  CYAYCGDVSHQGAFTNXIQAXFREP 423
            CYA+C D  H G F    +A    P
Sbjct: 1297 CYAFCFDHQHPGYFILCFKASVNSP 1321


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = +2

Query: 206 VINLRRTWEKLVLAARAVVAIEXPADVFVISSRXFGQRAVLKFAAH 343
           V+++R TW +LV+  +  + +    ++ +I++    +  V+ FA H
Sbjct: 89  VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVH 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,818
Number of Sequences: 5004
Number of extensions: 55913
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)